Edan013340.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- ZNF236
- Assembly
- GCA_000507165.2
- Location
- KZ500261.1:224545-235448[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0022 0.15 12.6 1.7 1 23 57 80 57 80 0.97 2 19 7.6e-06 0.00051 20.3 2.8 1 23 181 203 181 203 0.96 3 19 2.5e-06 0.00017 21.9 3.1 1 23 209 231 209 231 0.98 4 19 1.8e-05 0.0012 19.2 0.1 1 23 237 259 237 259 0.98 5 19 0.0036 0.24 11.9 0.6 1 21 265 285 265 286 0.93 6 19 0.0002 0.013 15.9 4.3 1 23 352 374 352 374 0.97 7 19 9.3e-05 0.0063 16.9 0.2 1 23 380 402 380 402 0.98 8 19 5.5e-06 0.00037 20.8 0.6 1 23 408 430 408 430 0.98 9 19 3.8e-05 0.0025 18.2 5.8 1 23 436 458 436 458 0.99 10 19 0.02 1.3 9.6 0.2 1 23 674 697 674 697 0.91 11 19 0.002 0.13 12.8 0.1 3 23 701 721 699 721 0.95 12 19 0.00077 0.052 14.0 0.3 2 23 732 754 732 754 0.95 13 19 8.5e-07 5.7e-05 23.3 0.6 3 23 848 868 847 868 0.98 14 19 1.4e-05 0.00097 19.5 0.2 1 23 874 896 874 896 0.97 15 19 1.6 1.1e+02 3.6 0.1 2 13 905 916 904 917 0.89 16 19 3.8e-05 0.0026 18.1 2.2 2 23 922 944 921 944 0.96 17 19 3.6e-07 2.4e-05 24.5 0.4 2 23 1075 1096 1074 1096 0.97 18 19 1.2e-05 0.0008 19.7 0.4 1 23 1102 1124 1102 1124 0.98 19 19 2.6e-06 0.00018 21.8 2.7 1 23 1130 1153 1130 1153 0.97
Sequence Information
- Coding Sequence
- ATGCCGTCCATATTGCTGCAACTTTTGTCCTGCTACATTTACACAGAGAGGTTAGTACTAGATCAGATCCTCAGCTACAGGCTACATAACTCCCTGTGTATTTCTTTAGGCAACCTGAGATCTCACATTGCTCGTGTGCACATCATGCCTCATCCTGGACAACAGGTTTATCAATGCCAACAATGTACTTGCGTTTTTAGAAAAGTTGGCTCACTGAATGCACACGTTAGCAGGCTCCATTCTAGATCAGCTCCTCAGATGAAACAGACCGataatgcaacaaaattatcaatTCAGTCAAAGGGTACCTTGGAAACCCCTCGAGTTTTTCAATCTCAAATTTCTATTGATGGAAACAACATATTAATTTCTAGTGACAACTCAGATATTCTGCAACAAGCAATTCATAAGAGTGGGCTTCAACAACCTGgTGCTCGAGACGAAAATCATATTACTGAAGTGGTGCTGGCTGATAGCCAAGGAGATGGAACTACAAGacGTTTTATTGTGCGAATGAGAAAGCAAGCAGGGATGCGTTGGCATCAGTGTATATATTGCACCAAAGAGTTCAAAAAGCCATCCGATCTTATACGTCACATGAGGACACACACCAATGAGAAGCCATATTCGTGTGAAATATGCCATAGATCATTTGCAGTCAAGTCTACCTTGAATGCACACATGCACACCCACACTCAGGAGCGATCATACATTTGTAATGTATGTCAGAAACGTTATGCATCAGCCAGTAGTCTTGGTGTTCATATGAGGTTGCACTTGGGTATCAAACCATTTGCCTGTGAAACTTGTGGGAGACGTTTCCGTACCACAGGTAATCGTGCAGCACATCAGTGTGAGTCTGCTAGAAGGGAGCGTGCAGCAAAACGCAAACTACAAATTGCTGAACGTCGTGAAATGAGGGAGCAGATCAGAGAGGGCTCTTTCCCTTTCTTGCAAGACCCTCTTTTTGTTAGTGAATCAGGAATAACAGTGGTGTCCAAGAAGAAAGGTGCTTTGCCAGATGAATCAGAAATGGGACAAATGATTCGTCCTTTTGTTTGTGTTGAATGTGGATGTCGTTTCAAGAAAAGTTCTCATttgaaacagcatgaaatttCTCATAAAGGGGTGAAGTCTTTTTCTTGCAACGTATGTAACAAGAATTTTGTATCTGCTGGAGTGATAAAAGCTCACATGCAAACACACGAAAAATCTCGCAAGTTCAAGTGTGACGATTGTGGGCAGTTGTACTCAACTAAGGGAAGCTTGAAACGTCACCTTGCTAGTCATTCATCTCGCAAGCCTTACGTGTGCCCATATTGTCATCGAGATTTCAAGACTTCTTCCAACTGCCGCAAGCATATACGTGTTCATGCTAAAGAGGTACTTTCTGGTATCATGGAACCAAACACAGAGTCTACATCAGAAGTGATGAGACAGATGGAGCAAGAGTTACCAGCATTGAACTCTTCACAAACTGCATCTGAAATGCCAGCTATTTCAAATGTGCAGCTATCTCAAAAATCTACTCCACATTCACCAAAATTGAAAGAGAATTTAAAACAGACATCAGTTATCATTTCAGGTTCTGTTTTAAAGAAAACTGGAAATATGTCAGACAGTGGTTTGGGATTACTTACACAGGAGAACATTCCAACTTTGGAGGAGAACATCAACCAACAGTTGCTGTCAACATCAAGCCATCCGCCATGTTCTGGTCATGTCATGGATCTACAGCACACATCCCAGCCTACTTCCTCTATGGGAGACATAGCCACAGTGGATTTCCCACCTCTGTTGAATGAGCAAGCTGGTGTGCTTGGAAGTGGACCAGGAAGTGGACTGGTCACAGTTGAGAGTGTGTACATTCAAGGCTTTGATGGTCAAGCTTTAGATACCACATTATTTAGTGGAGGTATACCAATACAGACTGATCCAATTGAGATGGGAGTTTTGAGCAACATTCTGGCATCTACATCATCTCATGCAGATCCAAATACCGAGGATGAGCCTTCAAGATTTAGTTGTGAGAGGTGTAAAGAGGGCTTTGTATCAATTGAGTCCTTGAGGCAACATGCATCAGAAGAGCACTCTCTGGCATGTGCTGTTTGTCAAGAAAGGTTCGACAGTCAAGCTCTTTTGGagcatCATTTGGCATCCCATTCCAAACAAAAAACAGCAGCAagAAAAAATGAATGTCAAATATGCAAGCTGGCTTTTCGTACGCCCAAGCAGCTTGCAATTCACAAGTCTCGAGCACATCGAACCAATCGGGGAAATCCTACTCCTCTTGCACCTGCAACCGAAGGACCTTTGCCATCCCTCACTACAACAGTAGAACACCTACAAAGCAGAAGAAAAGGCAGCAAAGCAACACAAGTGTCTGAAGAAGAAGTGACtaagGCACTTCAGTTTGGATTACAAGAACCTTCTCTCTCGGAACAGGTATTTCTAGCCAGTGTTCAAGAAAGAGAACGCCTCTCATCAATAAAGGAGACCACTGAATACAATGCACAAATGCCACCAAAATATGCCAATGCCTGCACACTGTGTCCTAAAAGTTTCAAGAAGCCTTCGGACATGGTTAGACACATGAGGACCCACACTGGAGAGCGCCCTTTTGTATGTTCCCAGTGTGGCAAAGGTTTCACAGTCAAGTCAACCTTAGTGGCACACTTTGCAACCCACAGAAAAGATGCATCATCTGGAATACCATGCCACTTATGTGGCTCAACATTTGCCACTAAAGGTGTCAAACCTCTCAAATGCCCCCACTGCGACATGAGTTTTAGAACTTCAGGACACCGTAAAGCACACATCCTCTCAGCACATCGGATTCAAACAGAGCCTAACAAAAGTGAAATGGAATCACAGTTGGAGTCGGAGGTGGAGACTGATGTAGAAACCAGTGCAATCGACCAACCAATGGAAGAGGAGGAAGAAGTAGCACCTGAACCTGAAGAACCTGAAGCATCATCAGAAAATCTTCAGTTGCTTCCCATCCAGTTGGAAACTACAGAGTTGATACAGCTGGATGAAAATCTTTTGCAGCAACTCCAAGCTGGTAACTTCATACTACACTCTGCAGACAGTGAAGGAACTATTCGCTTTGAGGTGTTTTCTGAAGTCACTGGTCAGCAAGTCATAGGAGAGATATCAACTGATACTGTGGTGGACAAATCAAATGATGCTACATCAGAGGAAGTGATTGTCAACTCTAAACAGTGTGCCACTTGTGGAAAGAGTTTTGCAAAGCCCAGTCAATTGTTGAGGCATATTAGAATTCATACAGGTGATAAGCCATTCCCTTGCATGATTTGTCCAAAACGGtttaaccaaaaaaatgcaCTCAACACTCATCTTTTGATGCACACTGGTCATAAACCTCACCAGTGTTCTTATTGTTCAAAGTTCTTTAGTCAAGCAGGTAATCTTAGAACACATGTACGCAGAGCCCATCCAGGAATCCACCAACTTGCTATGAAAAGTAAACAATAG
- Protein Sequence
- MPSILLQLLSCYIYTERLVLDQILSYRLHNSLCISLGNLRSHIARVHIMPHPGQQVYQCQQCTCVFRKVGSLNAHVSRLHSRSAPQMKQTDNATKLSIQSKGTLETPRVFQSQISIDGNNILISSDNSDILQQAIHKSGLQQPGARDENHITEVVLADSQGDGTTRRFIVRMRKQAGMRWHQCIYCTKEFKKPSDLIRHMRTHTNEKPYSCEICHRSFAVKSTLNAHMHTHTQERSYICNVCQKRYASASSLGVHMRLHLGIKPFACETCGRRFRTTGNRAAHQCESARRERAAKRKLQIAERREMREQIREGSFPFLQDPLFVSESGITVVSKKKGALPDESEMGQMIRPFVCVECGCRFKKSSHLKQHEISHKGVKSFSCNVCNKNFVSAGVIKAHMQTHEKSRKFKCDDCGQLYSTKGSLKRHLASHSSRKPYVCPYCHRDFKTSSNCRKHIRVHAKEVLSGIMEPNTESTSEVMRQMEQELPALNSSQTASEMPAISNVQLSQKSTPHSPKLKENLKQTSVIISGSVLKKTGNMSDSGLGLLTQENIPTLEENINQQLLSTSSHPPCSGHVMDLQHTSQPTSSMGDIATVDFPPLLNEQAGVLGSGPGSGLVTVESVYIQGFDGQALDTTLFSGGIPIQTDPIEMGVLSNILASTSSHADPNTEDEPSRFSCERCKEGFVSIESLRQHASEEHSLACAVCQERFDSQALLEHHLASHSKQKTAARKNECQICKLAFRTPKQLAIHKSRAHRTNRGNPTPLAPATEGPLPSLTTTVEHLQSRRKGSKATQVSEEEVTKALQFGLQEPSLSEQVFLASVQERERLSSIKETTEYNAQMPPKYANACTLCPKSFKKPSDMVRHMRTHTGERPFVCSQCGKGFTVKSTLVAHFATHRKDASSGIPCHLCGSTFATKGVKPLKCPHCDMSFRTSGHRKAHILSAHRIQTEPNKSEMESQLESEVETDVETSAIDQPMEEEEEVAPEPEEPEASSENLQLLPIQLETTELIQLDENLLQQLQAGNFILHSADSEGTIRFEVFSEVTGQQVIGEISTDTVVDKSNDATSEEVIVNSKQCATCGKSFAKPSQLLRHIRIHTGDKPFPCMICPKRFNQKNALNTHLLMHTGHKPHQCSYCSKFFSQAGNLRTHVRRAHPGIHQLAMKSKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -