Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.27 4.4e+02 1.0 2.7 16 43 28 52 21 53 0.75

2 8 0.044 71 3.5 3.1 17 43 59 82 42 83 0.74

3 8 0.004 6.5 6.9 2.0 18 43 101 123 95 124 0.84

4 8 1.2e-05 0.019 14.9 0.9 19 44 132 154 125 154 0.94

5 8 0.047 77 3.4 0.5 19 43 178 199 173 200 0.85

6 8 5.7e-05 0.092 12.8 4.5 16 44 205 230 198 230 0.88

7 8 0.0039 6.3 6.9 2.4 18 43 248 270 242 271 0.84

8 8 0.00027 0.44 10.6 1.6 14 44 274 301 268 301 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.27	4.4e+02	1.0	2.7	16	43	28	52	21	53	0.75
2	8	0.044	71	3.5	3.1	17	43	59	82	42	83	0.74
3	8	0.004	6.5	6.9	2.0	18	43	101	123	95	124	0.84
4	8	1.2e-05	0.019	14.9	0.9	19	44	132	154	125	154	0.94
5	8	0.047	77	3.4	0.5	19	43	178	199	173	200	0.85
6	8	5.7e-05	0.092	12.8	4.5	16	44	205	230	198	230	0.88
7	8	0.0039	6.3	6.9	2.4	18	43	248	270	242	271	0.84
8	8	0.00027	0.44	10.6	1.6	14	44	274	301	268	301	0.91

Coding Sequence: ATGCGGAGGTCGGAGAGGTATCTGAAAATGGATTTTGAAGTTTCGCAGAAAGCTGCGACCATGACGGATGTCAACAGCGAAACTTTTAGGTGTCACATTTGTGGCCTCGTCTATAAACATTACGCGTCTCTTTGGacgcacataaaaaatattcacggCGAATATGCCGGTCCTTTCATTTGTTCCATATGTGGAGTcactcttaaaaataaaaattcgttgCAGTCGCATGTAACCACCCTTCATAAAAATGAGCGCGGCCGTGGACAGGCTCCTGCCGCAGGCCACTCAACCCTCCATGCGTGTCCGATGTGTTCAAAAACGTACAAGTCTAGCAGCACTTTGACGCAGCATATCGCGAACATACACGGCAGAAATAGTATGCCTTTAGCTTGCGAATATTGCGGTACCgtgtacaaaaataaacatactTTAAGCTCGCATATTTGGAGAGATCACAAACGGAAAATTGATCAAAACAGCCGTCGACAGGGTGTGCGTCGCGCTGCAGGATTCTCAACCCCTCATGCTTGTCCGATGTGTTCTAAATCGTACAAGTCCGCCAGCACATTGGCGCAGCATATTACGAACATTCATGGTCGCAATAGTACGCCGTTAGCATGTGAATATTGCAAAACCATATACAAAAATAAGCATACTTTAACCTCGCATATTTGGagtaaacataaatttgaacagGACGggTTTGGGAGATCTACTGGTTTTCCACGTCAACAACATAATTGTAACATCTGCCAAAAATCGTATAAAGCTCTGAACAATTTGAACGAacacattgaaaatattcaCGGCAAATACAATCAGCGTGTAGTTTGTGATTTTTGCGGTGGCCTGTACAAGAACAAACACACCCTAAGGTCGCACGTGTCTCGAGATCATAAGAGGATACAGAGATAG
Protein Sequence: MRRSERYLKMDFEVSQKAATMTDVNSETFRCHICGLVYKHYASLWTHIKNIHGEYAGPFICSICGVTLKNKNSLQSHVTTLHKNERGRGQAPAAGHSTLHACPMCSKTYKSSSTLTQHIANIHGRNSMPLACEYCGTVYKNKHTLSSHIWRDHKRKIDQNSRRQGVRRAAGFSTPHACPMCSKSYKSASTLAQHITNIHGRNSTPLACEYCKTIYKNKHTLTSHIWSKHKFEQDGFGRSTGFPRQQHNCNICQKSYKALNNLNEHIENIHGKYNQRVVCDFCGGLYKNKHTLRSHVSRDHKRIQR

Sequence clustering based on sequence similarity using MMseqs2