Edan001982.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497710.1:303091-309458[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 2e-06 27.4 0.0 7 35 29 56 26 62 0.90 2 2 2 2.8e+03 -1.9 0.0 8 19 474 485 469 486 0.79
Sequence Information
- Coding Sequence
- ATGGAGGACGATTCATCGGATCCAGATTATGTGGATTCGAAACGTGTTAAAATAAAGACAAAGTACACTCTTTCTGATGTTAACAATGCAATTTTGGCCGTGAGAGAGGGTATGGGCAGACACGAAGCAGCAGCTAAATTCAACATTCCTAGGTCAACGTTGGAGAAAAAGCTGACGGAAGCAAGGCACGGAGGTGTGGTGAAAATGGGCAAAATTCCACGCTTAGGCTGGGACCAAGAAGTTGATCTTGCACACCGGCTGAAGCAAAGATTGGACAAAGGACTGAAAGTTACGGATAACTATATTGTGGAGTGTTGTGTTGAGGCCATACATAACCAGGGGAAGAAAGTGACGGACGTTTTCCCTAATGGGGGCCCAGGCAAGAAGTGGATTCGATTATTTTTGGCCAGACATCCTGTATTGgcaacaaaattaaagaaatgtcGCAGAAAAGGGGGGTACATTCAGGAGCAAAAACCTGTATCAGTACGTCAAAAATCGATTCCAGCTCATGCCACGAAGCCACCCATTCCCATGGACGTAGAAGTCATCACAGTTCAACCTGTAAATGaaactTCTGATGACCCAACGAGTTCGCCGCACCTCTCCTGGTGTGGACCACAACGACAAACATCGCAAAGCAACTATTTTGGTGTCGAGAGTTTGGTGGAGTGTGAGCTGAGACCCACGTCTCCTCAGAGTCCTCAGCATAGTTCGgcCCTACCCAAGCCAGTAAAGACACTGTTAAGACCTCCAGTTAAGAATTATATTGGACGAGAGTTGGAACTACAACAAATTATAAGTCTGATTCAATCGCGTCCCCGAGGCCATATATTCAGCTCTGTCGTGACTGGACCTCCTGGTATCGGCAAGACGGAACTTCTCCTGCGAGTGGTGACATCGTTGCAGAGCTTCCACTACGTCCTGTGGCTACGAGGCGACTCGTTGGCAGACAGCATCGAGAGGTCGGCCTCGCTGCTGGGCGTGGCCAACACAACGAGTGCAGTGTTCACGGCGTGCTCATCTCAGTCCACCCTGGTACTGTATGACAATGTGGCCAGCCCCGAGCAGTTGCAGGACTGGCTGCCTCCCTGCAACATCGATGCCAGTAGAATTGTGGTGCTCATCACCTCGCAGTATACAGACTGGGACTGTGACTTCCATCTGCCCCTCTCACCTCTAGAGCCTCAGCAGGGTGTGCAGTTACTTATGGACAGTCTGAACGTCCCCATGCCAATTGCCACGGACATATCCCAGCGTCTGAACCACCTTCCCCTGGCACTGCAACTTGTCATTGAGTACAAGAAGCAACTGCAAGCCGACAAGGAGATGGAGGATCCCTACGTCTTCCTACGCTTCAGACTGGCCACCTCCGAGCGAGATGGTTACAGCAAGTCCCTGTTTGAGGTTCTGGATCAGAGCATTGACCAGGTGCTGGAGGGGGAGATGGGGTTGGAGGCGAGGAACATGCTCAACTTGATAGCATTCATGGACCCTCTGTGTAGCAGCTTTGATGAGAAGGCTCTGGCGAGAACAGAATACGGCAGTGCCAAAGTGACAAGAATCTTAAAGTTGCTCCAGAATTTCTCTCTGGTACAGGAGGAGAGTGATGGATTGGTCATGTACAGATTGTACAAAGCCATTCTCAGAGCAAAGTGCACCAATGCTAAAGACGTTCAATATCAGCtcaagaaaattttgagataa
- Protein Sequence
- MEDDSSDPDYVDSKRVKIKTKYTLSDVNNAILAVREGMGRHEAAAKFNIPRSTLEKKLTEARHGGVVKMGKIPRLGWDQEVDLAHRLKQRLDKGLKVTDNYIVECCVEAIHNQGKKVTDVFPNGGPGKKWIRLFLARHPVLATKLKKCRRKGGYIQEQKPVSVRQKSIPAHATKPPIPMDVEVITVQPVNETSDDPTSSPHLSWCGPQRQTSQSNYFGVESLVECELRPTSPQSPQHSSALPKPVKTLLRPPVKNYIGRELELQQIISLIQSRPRGHIFSSVVTGPPGIGKTELLLRVVTSLQSFHYVLWLRGDSLADSIERSASLLGVANTTSAVFTACSSQSTLVLYDNVASPEQLQDWLPPCNIDASRIVVLITSQYTDWDCDFHLPLSPLEPQQGVQLLMDSLNVPMPIATDISQRLNHLPLALQLVIEYKKQLQADKEMEDPYVFLRFRLATSERDGYSKSLFEVLDQSIDQVLEGEMGLEARNMLNLIAFMDPLCSSFDEKALARTEYGSAKVTRILKLLQNFSLVQEESDGLVMYRLYKAILRAKCTNAKDVQYQLKKILR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -