Basic Information

Insect: Ephemera danica
Gene Symbol: bab2
Assembly: GCA_000507165.2
Location: KZ498044.1:146334-163099[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 8e-11 1.1e-07 31.4 0.0 2 41 280 320 279 323 0.91

2 4 2.5e-08 3.4e-05 23.4 0.1 2 38 334 370 333 376 0.88

3 4 1.3e-16 1.8e-13 50.0 0.0 3 44 390 431 388 432 0.96

4 4 4.5e-17 6.1e-14 51.4 0.0 3 40 441 479 439 482 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	8e-11	1.1e-07	31.4	0.0	2	41	280	320	279	323	0.91
2	4	2.5e-08	3.4e-05	23.4	0.1	2	38	334	370	333	376	0.88
3	4	1.3e-16	1.8e-13	50.0	0.0	3	44	390	431	388	432	0.96
4	4	4.5e-17	6.1e-14	51.4	0.0	3	40	441	479	439	482	0.94

Sequence Information

Coding Sequence: ATGGACAGTCCCGGTCCACAACAACAGCATCAACATTACTGCTTGCGATGGCACAACTACCAGAACAACATGAGCGCCGTGTTCCAGCAGTTGCTCAGAGACGAGGCTTTTGTCGACGTTACCCTGGCTTGCCAAGACCATTCACTGCGCGCACATAAGGTCGTTCTGAGCGCTTGTTCTCCATACCTACAACGCATCTTACTGGAGAACGAATGTCGTCACCCTGTGATCGTGATGCCACACGAGGTCGGCTTTCACGAGCTGCAGGGAGTCATCGAGTTCGCCTACAGAGGAGAGGTGGACGTGGCGCATGCAGATCTGCCCTTGCTGCTCAGAGCGGCGGAAGTGCTTCAGGTGCGAGGACTATGCGAGGTAGCGGCCCGCCACATGCTATCTCGACCTTCAAATGTGAAATACTCTACGTTCCGGCGTCAAGTGGAGGACATTGAGGAACTCAGCTGCTATCCGGAAGCTTCTCCAGAGCCTGAGAACCTGACACGTCACGAGCCTGAGCGTCACGGCAGCAAGCGGCAACATGAGGACGATGCAGAGACAGACGTCAATGCTAACATGCAGCCCAAACTGCACGAGCCGATAGgTGCTGTCGCTGTGCAACCACGATCACGTGAAAATATAGAGGTGAAATTGGAAATGCGAGGCGAGGAACACCCGCTCGATATGGCAATGGAACCAAATCATTCCGATCGCaGCTGCGCTACTGAGGAAGATCAAACTATGATGATCACCCCTGAACTTCTCGGTCTCATCCCAACCTCCTCACTTACCTCAGACGCGAGCTGCGACACGCCGATACACAAAAGCAACAAACACTGGAGCCAAGAGGACATGGACTTAGCACTGGAAGCTCTAAGGACGCAGAGTATGAACTTGACCAAGGCCAGTACCACATTCGGTATCCCCAGCACAACTCTCTGGCAGCGAGCGCACCGTCTAGGTATCCACACACCGAAGAAAGACAGTCAGGCCAAGAGCTGGAGCGAAGCTGACTTGAATCTGGCCCTGGATGAGCTCAGAGCTGGACGTATCTCGGCCAACCGCGCCTCAAAAACCTACAGAATTCCAAGCTCCACGCTGTACAAGATCGCGAGGAAAGAAGGCATCAAATTGTCAGCGCCTTTCAATGCTTCACCAACCACCTGGAATTCAGATGATTTAAACCGAGCCCTAGAAGCAATTAGGAACGGCGCCTCGGTTCAAAAAGCTGCGACCGAATTCGGAATCCCAAGCGGCACACTGTACGGCCGCTGCAAACGCGAAGGTATCGAACTGAGCAAGACGACCCCAGTTCCCTGGTCCAGCACGGACATGACGGAGGCCCTGGATGCTGTGCGAGGTGGCGAGATGAGCATCAACCAAGCCGCCATTCACTACAATCTCCCATACTCGTCGCTGTACGGCCGCTTCAAGAGGGTCAAGTTCGAGGATGGGAAAGTTGactttgaaatgtataattctGCCTGTAGCACGGATCACTGA
Protein Sequence: MDSPGPQQQHQHYCLRWHNYQNNMSAVFQQLLRDEAFVDVTLACQDHSLRAHKVVLSACSPYLQRILLENECRHPVIVMPHEVGFHELQGVIEFAYRGEVDVAHADLPLLLRAAEVLQVRGLCEVAARHMLSRPSNVKYSTFRRQVEDIEELSCYPEASPEPENLTRHEPERHGSKRQHEDDAETDVNANMQPKLHEPIGAVAVQPRSRENIEVKLEMRGEEHPLDMAMEPNHSDRSCATEEDQTMMITPELLGLIPTSSLTSDASCDTPIHKSNKHWSQEDMDLALEALRTQSMNLTKASTTFGIPSTTLWQRAHRLGIHTPKKDSQAKSWSEADLNLALDELRAGRISANRASKTYRIPSSTLYKIARKEGIKLSAPFNASPTTWNSDDLNRALEAIRNGASVQKAATEFGIPSGTLYGRCKREGIELSKTTPVPWSSTDMTEALDAVRGGEMSINQAAIHYNLPYSSLYGRFKRVKFEDGKVDFEMYNSACSTDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00651050;
90% Identity: iTF_00651050;
80% Identity: iTF_00651050;