Basic Information

Gene Symbol
stc
Assembly
GCA_905220475.1
Location
HG992033.1:3023185-3044815[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2 3e+04 -6.3 4.0 15 19 537 541 536 543 0.66
2 12 0.49 7.2e+03 -2.2 1.7 2 10 569 577 569 577 0.79
3 12 0.00069 10 7.0 18.9 4 19 585 600 583 600 0.93
4 12 2e-08 0.00029 21.5 13.8 1 19 636 654 636 654 0.97
5 12 7.5e-05 1.1 10.0 14.3 1 19 695 713 695 713 0.98
6 12 9.6e-06 0.14 12.9 12.5 1 19 754 776 754 776 0.88
7 12 2 3e+04 -5.3 2.2 6 10 806 810 806 810 0.94
8 12 0.025 3.6e+02 2.0 7.8 1 11 816 826 816 827 0.93
9 12 0.38 5.6e+03 -1.8 0.9 4 10 831 837 830 837 0.89
10 12 1.4e-07 0.002 18.8 13.4 1 19 843 861 843 861 0.99
11 12 0.00063 9.3 7.1 10.3 9 18 907 916 902 917 0.93
12 12 4.5e-08 0.00066 20.3 13.9 1 17 953 971 953 977 0.84

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAATTCTTATGTATACAACAATCAGTACCAAAGCCCCAATACCTGGAATGGTGAGATGAATGGTCAGTACATGAACCAGGCATATTATGCTAGACCTGATGCGGGTGCACAGTATGTAAGCTTTAACGAGTTTATCAATCAAATGCAATCCAACAATCCTGCGACAGGTAATGCTGCGAACTATAACAATATACAATTTGAAAGCTACCCAAACCGTCAGTACAACTACCAGAATATGCCATCTACATCCCAAACTCAGCTCAGTAACTACAACTATGCATCAGCACCCAGCAACATACCTAGCGAAGCAAACGCCTACCCACTAAATGTGCAAGGTCAGTACAATCCCCAACCAGAATCTAATTCTTACACCAGTGAGATGATATTAAATTCTAACCTTACACCGACAGCAACAGAGTTTGTGCCAAAATCTTCTACTGCACAACCTACAAATAGTAACCAGAATATTCCTGAACCTACAACCAGTCAAAATATTGCTAATGAACCTCAAACTAGCTTTAAGAAAAAAGTTGGAGGTAGTTCATCCGATAAAAACTGGAGGGAACGGCCACAAAATTCAAAACCTAGTACTGCAAAAGAAAAGCCAACACTAAATGGATATTCATGTGTTGATGGTAAAGGCTCTACTATCAATAACCAAATCAAAGATACATATCAACGAAATAATGAGGGTAATGGCAGACAGTATGAGAATAATAAGAATCAAGATGCTGGCAATCAGGACTATGAATCTGAAGCTAGGAGTCAAGAACCTAACTCTCGCAGTAACCAACCAAGTAGTAAAAACAGTGAGCCTAACAGTAGTAACCAAGAATCTAATAATCGTAATTATGAACCTCGTGGTCGCAAACAGTATGAATCCAACAGGAACCCTGAATCCAACACCCGTAACCAGGAATCAAATAGTCGAAATCAGGACACTAACAGTCGTAATTACGACAATAGCAGTCGGAATTCAAACAGTAGAAACAATGATTCAAATAATCGTAACCAAGAACATAGTAGAAACCAAGAGTTTAACAGCAGAAATCAAGACTCAATCTCTCGCAACTATGAATCAAACAACCGCAATGAAAGAAGAAACCAGGCAAAAGGTAATACAAAATTTAAAGGCAAAGACTCAGACAATCGGACCTTCTACAACAGTTCAATGCCAAAAGAACAAGATAATAGAGGAGGACGGGGTGAGGGTAGTGGGAGAAATAGAAACTGGACAGGAAGTCAGAGAGTTCGAGGTTCAGAGCGTAACAATGTAGAGGATGAGCAGTATGCTAGCAACTATATACCTCAAAAGGAAGAGAGAATAGAAAAAGATAGAGCTGCTAAGATACAAAATGTTGCCAGTCCAGGTAGATTTCGAAACAAACAACATGGGGACCAAGTAAACAAAGAGATGACACAACGAGAACGATTAGCAGAGCAGCTAGATAAAGGCACGCTGGAGTGCCTGGTGTGCTGTGACCCAGTTAAACAAATGGACCCTGTTTGGTCATGTGGCAACTGCTTCCATGTCTTACATCTACGGTGTATAAGGAAGTGGGCCATGAGCAGTACGGTTGAGGGCAAATGGCGCTGCCCAGCTTGCCAGAACTGCAACGATTCTATCCCGACGGAGTACCGTTGTATGTGCGGTGCCGTGCGTTCACCTGAGTACTCCCGCAGTGCGGGTGGCGCTCACACTTGCGGGGGCGCTTGCCGGAGACCGCGCGCCTGCCCTCATCCGTGTGCACTGCAGTGCCATCCAGGACCCTGCCCGCCTTGCCAGGCTACTGTTGCCAAACAATGCGGCTGTGGAGCGGAAACCCGTTCAATCCTATGCAGCAGCAAATTGCCGCAGCTGTGTGGCCGAGTGTGCGGGAAAAAGCTGGAGTGTGGGGTGCATACTTGTACCAAGGAGTGTCATGAAGGACCCTGTGATACTTGCACCGAGTCGGTTGAACAAGTGTGCTACTGCCCGCGCGGCGCGGCGCGCTCGGTGCCGTGCACGGCGGAGGCGGGCGCGGCGCGCGCGTGGGCGTGCGGCGCGGCGTGCGCGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCCGTGCCACGCGCCGCCCTGCGGCCCGTGCTCCCTGCGCCCCGCCGCCGTGCCCGCCTGCCCCTGCGGCAAGATGAAACTGGAGGCGGGCAGCCGCCAGTCGTGCACGGACCCGATCCCGCTGTGCGGCAACATCTGCGCCAAGCCGCTGGCGTGCGGGCCCGACGGGGACCGACACTTCTGCAAGGTGGACTGCCATGAAGGCCCATGCCCGACTTGTCCCGACAAGACGCTGGTACAATGCCGCTGCGGGCACTCGAGCCGTGACATACCCTGCGTCGATCTACCAGAGATGGCGAACAATGTACTGTGCCAGAAGAAGTGTAATAAGAAGCTGTCATGCGGCCGGCACCGCTGCCGCACGTCGTGCTGCGCCGCGACCACCCACCGCTGCGCCGTGGCCTGCGCGCGCTTGCTCACGTGCGGCACGCACCGCTGCGAATACTTCTGTCACACCGGGCACTGCGCGCCCTGCCCGCGCCTCAATTTCACGGAGCTGGCGTGCGAGTGCGGCGCGCAGGTGGTCCTGCCGCCGGTCCGCTGCGGCGCGCGGCCGCCGCCGTGCGCCGCGCCGTGCCGCCGGCCGCGCGCCTGCCGCCACGCGCCGCACCACAGCTGCCACTCCGGCGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGGTGCTACGGGGACCATGAAGAACGAAAGACCATTCCGTGTTCACAAGAAGGGTTCTCGTGCGGATTGCCGTGCGGCAAACCTCTGCCGTGCGGGAAGCACACCTGCATTAAGACTTGCCACAAGGGACCATGCGATGCTGGCAAATGCACCCAGCCGTGCGAGGAGAAGCGTCCGTCGTGCGGGCACCCCCCCTCGGCCGCGTGCCCCTCGGCCGCGTGCCCCTCGGCCGCGCCGTGCCGCCGCCTCGTGCGCGCCGTGTGCCCCTGCTTGCGGCGGCACGCCGACCGCACCTGCAACGACAATGCGAGGGACTACGCCAAAATGATGAGCGCAATGGCTGCTACGAAAATCCAAGAGGGTGGTTCCGTCGACCTGTCCGATATCCAGCGCCCCAGGAACATGCTCAAAACCCTGGAGTGCGACGACGAATGCCGCGTAGAAGCGCGCACTCGCTCCTTGGCGCTGGCTCTCCAGATAAGGAACCCCGACGTGTCCGCCAAACTAGCGCCGCGGTACAACGATACTCTCCGCGCGTTCGCTACTAAAGACCCCGCCTTCGCTGACAGCATCCATCAAGCGCTCACAGACCTCGTGCAGCGAGCCAAGAGGTCGAAGCAGAAGACCCGTTCGCATTCGTTCCCGAGTATGAACTGGCAGAAGCGTCAGTTCATTCACGAGCTGTGCGAACATTTCGGCTGCGAGAGCGTCGCGTACGACGCCGAGCCAAACCGGAACGTCGTCGCCACTGCCGACAGGGAAAAGTCCTGGCTGCCCGCGATGAGCGTGGTGGAGGTGACGGCGCGCGAGGCGGGCCGGCGCCGCGTGCCCGGGCCCGTGCGCCGCGCGCCCGGCCCCGTGCACTGCGCGCCGCCGCCGCGCCTGCCGCCGCGGGACACCAACAGATCGTCCGGCGGGTGGGCGACGCTAACGTCTGCCAACGCGTGGGCCGCTCGCAGCCAGCCGCGGCCCGCGCCGCCCGAAGACAAGATCGACTACTTCGACAACCCGCCAGACAACTAG
Protein Sequence
MSQWNNSYVYNNQYQSPNTWNGEMNGQYMNQAYYARPDAGAQYVSFNEFINQMQSNNPATGNAANYNNIQFESYPNRQYNYQNMPSTSQTQLSNYNYASAPSNIPSEANAYPLNVQGQYNPQPESNSYTSEMILNSNLTPTATEFVPKSSTAQPTNSNQNIPEPTTSQNIANEPQTSFKKKVGGSSSDKNWRERPQNSKPSTAKEKPTLNGYSCVDGKGSTINNQIKDTYQRNNEGNGRQYENNKNQDAGNQDYESEARSQEPNSRSNQPSSKNSEPNSSNQESNNRNYEPRGRKQYESNRNPESNTRNQESNSRNQDTNSRNYDNSSRNSNSRNNDSNNRNQEHSRNQEFNSRNQDSISRNYESNNRNERRNQAKGNTKFKGKDSDNRTFYNSSMPKEQDNRGGRGEGSGRNRNWTGSQRVRGSERNNVEDEQYASNYIPQKEERIEKDRAAKIQNVASPGRFRNKQHGDQVNKEMTQRERLAEQLDKGTLECLVCCDPVKQMDPVWSCGNCFHVLHLRCIRKWAMSSTVEGKWRCPACQNCNDSIPTEYRCMCGAVRSPEYSRSAGGAHTCGGACRRPRACPHPCALQCHPGPCPPCQATVAKQCGCGAETRSILCSSKLPQLCGRVCGKKLECGVHTCTKECHEGPCDTCTESVEQVCYCPRGAARSVPCTAEAGAARAWACGAACARVLACGAHVCRAPCHAPPCGPCSLRPAAVPACPCGKMKLEAGSRQSCTDPIPLCGNICAKPLACGPDGDRHFCKVDCHEGPCPTCPDKTLVQCRCGHSSRDIPCVDLPEMANNVLCQKKCNKKLSCGRHRCRTSCCAATTHRCAVACARLLTCGTHRCEYFCHTGHCAPCPRLNFTELACECGAQVVLPPVRCGARPPPCAAPCRRPRACRHAPHHSCHSGDCPPCVVLTTKRCYGDHEERKTIPCSQEGFSCGLPCGKPLPCGKHTCIKTCHKGPCDAGKCTQPCEEKRPSCGHPPSAACPSAACPSAAPCRRLVRAVCPCLRRHADRTCNDNARDYAKMMSAMAATKIQEGGSVDLSDIQRPRNMLKTLECDDECRVEARTRSLALALQIRNPDVSAKLAPRYNDTLRAFATKDPAFADSIHQALTDLVQRAKRSKQKTRSHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVVEVTAREAGRRRVPGPVRRAPGPVHCAPPPRLPPRDTNRSSGGWATLTSANAWAARSQPRPAPPEDKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-