Basic Information

Gene Symbol
pnr
Assembly
GCA_905220475.1
Location
HG992026.1:17592331-17604513[-]

Transcription Factor Domain

TF Family
zf-GATA
Domain
zf-GATA domain
PFAM
PF00320
TF Group
Zinc-Coordinating Group
Description
This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.7e-18 3.3e-14 52.9 4.1 1 35 111 144 111 145 0.97
2 2 3.4e-18 1.5e-14 54.0 6.0 1 34 165 197 165 199 0.98

Sequence Information

Coding Sequence
ATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTGCAGCAGTACGCCGCGCACTTCGCGCCGCACCAGAACGTGTGGCACCACCACCACGCCGCGCACCACGACTCCTACGGCGGCGGCGGCGTGGGCGGCGTGGGCGGCGTGGGCGGCGTGCCGGCCGGCCTCTACGGCCAGAACGTGGTGATGGGCTCCTGGTGCGCGCCCTACGACCCGCTGCAGCGCCCGCCCGCCTACGATGGCGCGCTGGACGTGTTCGAGGAGGGGCGCGAGTGCGTCAACTGCGGCGCCAACAACACGCCGCTGTGGCGCCGCGACTCCACGGGCCACTACCTGTGCAACGCGTGCGGCCTGTACCACAAGATCAACGGCGTGAACCGGCCGCTCGTGAAGCCGAGCAAACGGCTGTCGGCAGCGCGGCGGCACGGGCAGTGCTGCACCAACTGCGGGTCGCGCAACACGACGCTGTGGCGCCGCAACAACGACGGCGAGCCCGTCTGCAACGCCTGCGGGCTCTACTACAAGCTGCACGGGATCAACCGACCACTAGCGATGAGGAAAGATGGCATCCAGACCCGAAAACGCAAGCCCAAAAAGGCTGGTAACGGAAGCAAACCTGCCCAGGATTCTATTAAGAAAGATGAACACAGCTCCCCTGGAATCGATGACAGCAAGTCGAGCCTGTCCGGGCCGGAGCTGCCGCCGGCGCCGGCGGCGGGCGGCGCGCGGCGCGAGGCGGGGGCGGGGGCGGGGACGGGAGCGGGCGCGCAGTACGGCCTGCTGCAGTCGCCGGCCTTCCTCCACAGCCCGTCGCTGTTCAACATCAAGAGCGAGCCGCCCGCGGCCGCCGCCTACGACAGCTACGCGCACGCCGAGCACGCGCACGCCGCGCACGCCACGCACGGCTCGCACGCCGCGCACGCCGCGCACGGCTCGCACGCCGCGCACGCCACGCACGGCTCGCACGCCGCGCACGCCGCGCACGGAGCGCCTTCGCATTACCACTCGCAGCAGCACTATCTGCATGCGTTACAGTACGGGCTGGGCAGCGGCGAGGAGGAGGAGAGCAGCGGGTTCCTGCACCAGCGCAACGTGACGGCGCACGCCAAGCTCATGGCCTCCACGTAG
Protein Sequence
MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLQQYAAHFAPHQNVWHHHHAAHHDSYGGGGVGGVGGVGGVPAGLYGQNVVMGSWCAPYDPLQRPPAYDGALDVFEEGRECVNCGANNTPLWRRDSTGHYLCNACGLYHKINGVNRPLVKPSKRLSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQTRKRKPKKAGNGSKPAQDSIKKDEHSSPGIDDSKSSLSGPELPPAPAAGGARREAGAGAGTGAGAQYGLLQSPAFLHSPSLFNIKSEPPAAAAYDSYAHAEHAHAAHATHGSHAAHAAHGSHAAHATHGSHAAHAAHGAPSHYHSQQHYLHALQYGLGSGEEEESSGFLHQRNVTAHAKLMAST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-