Basic Information

Gene Symbol
-
Assembly
GCA_905220475.1
Location
HG992052.1:715180-720005[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.044 4.2 8.7 3.8 2 23 104 125 103 125 0.95
2 12 0.00016 0.015 16.4 0.1 2 23 132 154 131 154 0.92
3 12 1e-06 9.6e-05 23.3 0.3 1 23 168 190 168 190 0.99
4 12 0.0012 0.11 13.7 4.6 1 23 195 217 195 217 0.99
5 12 0.02 1.8 9.8 0.8 1 23 225 248 225 248 0.94
6 12 0.12 11 7.3 0.7 2 21 257 276 256 277 0.94
7 12 6 5.7e+02 2.0 2.5 3 23 286 306 284 306 0.93
8 12 0.09 8.5 7.8 6.1 1 23 461 483 461 484 0.96
9 12 0.25 24 6.4 2.1 1 20 492 511 492 513 0.91
10 12 0.16 15 7.0 3.9 1 23 545 568 545 568 0.96
11 12 0.21 20 6.6 0.6 2 23 574 595 573 595 0.94
12 12 0.00078 0.073 14.2 3.1 1 23 601 624 601 624 0.98

Sequence Information

Coding Sequence
ATGTCTGTTACGCAAGAAATTAAAAGAGATGACACTGCAGAGCTATTCTCGACTGTATGGGTGAAAATGGAAGTTAATGAGGATGGAGAGGTCGAGGGAATTAATCAAGAGCCCAAAAAAGAGGAACAAGATCAGCCATATCAAAATATTGAAGAATATCAACAATATCAGCAAGTTCAAGAAAATAGACACGAAGAATATCAGCAGGCTGATAGAGATCCAGACTATCAGGATATGGAGCGTCCCAAAAGGGGCAGAAGAAAAGCTACCACCCCGAGAAAAAGAAAATACAACTATACAAACATCCTCAATTGCGATTATTGCGACTACAAAACACCTTACAAACACTGTTTGAGATACCACATCATGGACCACAACAAGCAGAGGCCACTGTCCTGTGAACTCTGTGATTACACCACGAAGTACCCCGCCAACCTACAGCGGCATATCATTGGCCAGCACAAGGCGAAGGATGACTCCAAAGCTGAGGAGTTTCCCTTGTTCCAATGTCCAGAATGTCCATATACTTCTATATTCAAATCGAATCTGGCCGCTCATATGAGAAAACATTGTGATAAGAAATTTAAATGCCAGGATTGTGATTACTCGACAGCATACAAACACAGTTACGTCAAACACAGCAGAACACATAAGGTGAAAAATGATGTGACGTATCAGTGTGATAAATGCCCTTTTGTTACTAAATACGAAGGTCATATAAGCAGGCACTTGGCTCAAATACATAGGGAGGTCTCCGAGACAGCGAGCAAATGTAACTACTGCGAATTCTCCACAAAACTCAAATGGAGATTGAAAATTCACATAAATAGAAGTCGTAAAAAGAAAGCAATGAATTGTGTTTTTTGTGATTTTACCACAGTATATAGTTGTGAGTTTAAAATACATAAAGGGAGACATAACGGTCTATACAATAAAGCATTACTTGAAACTGATTATTACATTAAAAACGATAACTTTATATATCCTGAAACAATTAAGGACCCGGAGTGTATCCTTGAAGATCCAGAGTATACACCTAAAGACCCGGAATATAAACCTAAGATTCCGGAACATGCATCTGAAATACCCAATTACGCACACGAAGCCCCGCAAAATACACCTAATGTCCTGGGACATACGTCTCAAATCTCGGAATGTCCCAAGGTCCCAGAATATACATCTACGGAATATGGACCGGATAAAACTGAGAATTTTATTAAGCAAATAACAAATAGAAAATCTAGTTCAGTGTTGCACATTGACAATGTTAAAGATCAAACTGTACTAATAAAGAAAAACCAGTATATACTAGATACAGATAGTTTGGAGGTGGACTGGCGCAGCATTGAGGTGAACGAGCGTCCGGGGCAAGAGAAACCGTATGAATGTACGCATTGCCAATACAGTGCTAAATTCAAGGCTTCCGTCCAACGTCATTTTCAACGGCATCACACAAGTCAGAATAACAGACCATACAAATGTGTCAACTGCGATTTTTGCACCAAAACTAAAGATCAAATCGCGTTGCATAACAAGCGAAGCTTATCTACCGTCCTTCTAGACTGCAAGACATGCGGTTTCAGTACATACTTCAAATGTCAACATGTAATGCATCAAAAGACGCATTACCCTTACAAATGTAAACTTTGCAGTTACACTTGTAGACTGACTTACGATATACAGAAACATTATTCTGTGGTACATCTCGGGAACGGTTTGAAATGTAGGTACTGTGATTTCAAAGCGAAAAGGAAGGAAAGCGTGCTTACACACGAAGCAATACACACTGGAGAAAAACCTTTCAAATGTGAACATTGTGAATATACGTCTGTGCGACGTATTTTGTTGAATAATCATATCAAAAAGAAACATTATGATAAGTTGAATAAACCTGTTATCATCGCTGATGATAAAATTGAATCCCTGAAGAGAACCATCGATGAACACGCAAAGGATATCGCAGATTGTATAAATGAGTGCATGTACGATATAGTGAGTAAAAATAAAGGTAATATGGTTGAAAATGAAATGTTAGGTGATAGTGAATCTCAGGAGATGATGGTGAAGGAATCGTCTCCTGTTTTTGATTGA
Protein Sequence
MSVTQEIKRDDTAELFSTVWVKMEVNEDGEVEGINQEPKKEEQDQPYQNIEEYQQYQQVQENRHEEYQQADRDPDYQDMERPKRGRRKATTPRKRKYNYTNILNCDYCDYKTPYKHCLRYHIMDHNKQRPLSCELCDYTTKYPANLQRHIIGQHKAKDDSKAEEFPLFQCPECPYTSIFKSNLAAHMRKHCDKKFKCQDCDYSTAYKHSYVKHSRTHKVKNDVTYQCDKCPFVTKYEGHISRHLAQIHREVSETASKCNYCEFSTKLKWRLKIHINRSRKKKAMNCVFCDFTTVYSCEFKIHKGRHNGLYNKALLETDYYIKNDNFIYPETIKDPECILEDPEYTPKDPEYKPKIPEHASEIPNYAHEAPQNTPNVLGHTSQISECPKVPEYTSTEYGPDKTENFIKQITNRKSSSVLHIDNVKDQTVLIKKNQYILDTDSLEVDWRSIEVNERPGQEKPYECTHCQYSAKFKASVQRHFQRHHTSQNNRPYKCVNCDFCTKTKDQIALHNKRSLSTVLLDCKTCGFSTYFKCQHVMHQKTHYPYKCKLCSYTCRLTYDIQKHYSVVHLGNGLKCRYCDFKAKRKESVLTHEAIHTGEKPFKCEHCEYTSVRRILLNNHIKKKHYDKLNKPVIIADDKIESLKRTIDEHAKDIADCINECMYDIVSKNKGNMVENEMLGDSESQEMMVKESSPVFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00649537;
90% Identity
-
80% Identity
-