Basic Information

Gene Symbol
-
Assembly
GCA_905220475.1
Location
HG992048.1:10956809-10963979[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0067 0.63 11.3 1.0 1 19 326 344 326 344 0.96
2 10 0.0022 0.21 12.8 0.3 1 19 377 395 377 398 0.94
3 10 0.0022 0.21 12.8 0.3 1 19 514 532 514 535 0.94
4 10 0.00037 0.035 15.3 1.5 1 23 559 581 559 581 0.98
5 10 0.0039 0.37 12.0 0.4 1 23 597 620 597 620 0.95
6 10 0.00072 0.067 14.4 0.9 2 23 631 652 630 652 0.96
7 10 0.0015 0.14 13.4 2.5 3 23 660 680 658 680 0.96
8 10 7.9e-05 0.0075 17.4 2.3 2 23 687 708 687 708 0.97
9 10 3.8e-06 0.00035 21.5 2.9 1 23 714 736 714 736 0.97
10 10 0.0065 0.61 11.3 0.0 1 22 742 763 742 763 0.96

Sequence Information

Coding Sequence
ATGGATGATATATGTCGTTTGTGCTGTTCTAAAAATTTTGTAAATAATAACATATTTGATGAAGAAAATGCTTTGTACCTCAAAATGTCTCTGTATCTACCAATAAAGGTTTTTAAGACTGACCGGCTGCCGCAAAAGGTTTGTGATAAATGCAGCTGTAAAATAAACGATTTCTATCAGTTTTGCAATGAAACTATTGAAGTTCAGAACAGACTTCGCTCATATCTTCTGGCTAGTGACACTGGATCAGAAAAAATAATAGACTTAACAAGAATCAAAGAAGATACATCCCCACTGCCACACTGTAAAATTAAAGAGCAAAGCACACAGACTGAATGGGATGAGCATACCATTCACTGTAACAATGGAATCAATGATGTCCAAGTTAAAGAAGAACCAAGAACATTATCACCAATCAAAGAAGAAAATGTATATGATGATTACTTGGACTTAGATAGGCTTTCAGATAACAGTGATGATATGACGCTAATAACACTCAAGAAAAAAAAGAAAAATAAAAAAGTAGACATCAATGGAGTTGAAAAAAAACCAAGAAAAAAGAAACCAAAGCTTGATGATTTAGAAATATTAATGAACACCTTGCCCAAAGGAACTAAGTTGTCATTAGTGGATAGAAATAATGTGCCTGTGAAAAAGGAGCGACAGGAAGGTGCTCATCCTGTTAAAGTACAAAACTTTGATGTGTTGCTGGATGTGAAGCAGGTCAAGAACGAGCCGGGTGAGGGGGAGGCCATCAACTGTTGTATTTGTATGATGCAGTGCTACAGTAAGAATGAAATGATCCAGCATTACAGAGAGCACGGCCGCGAGGTGGTGCTGCCCGCCGAGCCCCCCCCCGCGCCGCCCCCCCCGAAGGGCGAGGACCCCCTGCGCTGTGTGCGCTGTAGGAAGTGCCTGCCCCCGCACGAGTGGGCGGCGCACTGGGCGCGGCACTGGGAGCGCGACCGCCGCCCCTACACCTGCGCGCTCTGCGAGAAGACCTTCCGCGACCCGCACCAGATATACAAGCACGATATACAAGCACGGTATGCTAGCCCCCACGGTCCCCCCCCCCCCCCCGAGTGGGCGGCGCACTGGGCGCGGCACTGGGAGCGCGACCGCCGCCCCTACACCTGCGCGCTCTGCGAGAAGACCTTCCGCGACCCGCACCAGATATACAAGCACGGTATGCTAGCCCCCACGGTCCCCCCCCCCCCCCGAGTGGGCGGCGCACTGGGCGCGGCACTGGGAGCGCGACCGCCGCCCCTACACCTGCGCGCTCTGCGAGAAGACCTTCCGCGACCCGCACCACATATACAAGCACGGTATGCTAGCCCCCACGGTCCCCCCCCCCGAGTGGGCGGCGCACTGGGCGCGGCACTGGGAGCGCGACCGCCGCCCCTACACCTGCGCGCTCTGCGAGAAGACCTTCCGCGCCCCGCACCAGATATACAAGCACGGTATGCTAGCCCCCACGGTCCCCCCCCCCCCGAGTGGGCGGCGCACTGGGCGCGGCACTGGGAGCGCGACCGCCGCCCCTACACCTGCGCGCTCTGCGAGAAGACCTTCCGCGACCCGCACCAGATATACAAGCACGGTATGCTAGCCCCCACGGTCCCCCCCCCCGAGTGGGCGGCGCACTGGGCGCGGCACTGGGAGCGCGACCGCCGCCCCTACACCTGCGCGCTCTGCGAGAAGACCTTCCGCGACCCGCACCAGATATACAAGCACGGGCTGACCCACAAGCAGGGCGCGGGGGCGGGGGCGGCGGAGCCCCTCGACAAGCGCTTCATCTGTGACCTGTGCCCCGAGAGCTTCGTCTACATGAGGTACCTGCACGCGCACCGCGCGCGCGCGCACCCCGAGGCGGGCGCGCGCGCGCTGGCGCTGCGCTGCGGCGTGTGCGCGCGCCAGTTCGCGCACCTCAACTCGCTGCGCCGGCACCTGCGCGCGCACTCGGGCGAGCGCAACCACCTGTGCAACGTGTGCGGGAAGGCGCTGTCGAGCCGCGAGCACCTCAAGTTCCACATCCGCATCCACACGGGCTACAAGCCCAACGTCTGCAAGACGTGCGGGAAGGGGTTCGTGAAGAAGTGCAACCTGACGCTGCACGAGCGGGTGCACTCGGGGGAGAAGCCGCACGTGTGCTCGCACTGCGGGAAGGCCTTCAGCCAGCGCTCCACGCTCGTCATACACGAGAGGTACCACAGCGGCGCGCGGCCGTACGTGTGCGCGCTGTGCGGGCGCGGGTTCGTGGCCAAGGGGTTGTTGTCCATGCATCTCAAGACCACCTGCATCTAG
Protein Sequence
MDDICRLCCSKNFVNNNIFDEENALYLKMSLYLPIKVFKTDRLPQKVCDKCSCKINDFYQFCNETIEVQNRLRSYLLASDTGSEKIIDLTRIKEDTSPLPHCKIKEQSTQTEWDEHTIHCNNGINDVQVKEEPRTLSPIKEENVYDDYLDLDRLSDNSDDMTLITLKKKKKNKKVDINGVEKKPRKKKPKLDDLEILMNTLPKGTKLSLVDRNNVPVKKERQEGAHPVKVQNFDVLLDVKQVKNEPGEGEAINCCICMMQCYSKNEMIQHYREHGREVVLPAEPPPAPPPPKGEDPLRCVRCRKCLPPHEWAAHWARHWERDRRPYTCALCEKTFRDPHQIYKHDIQARYASPHGPPPPPEWAAHWARHWERDRRPYTCALCEKTFRDPHQIYKHGMLAPTVPPPPRVGGALGAALGARPPPLHLRALREDLPRPAPHIQARYASPHGPPPRVGGALGAALGARPPPLHLRALREDLPRPAPDIQARYASPHGPPPPEWAAHWARHWERDRRPYTCALCEKTFRDPHQIYKHGMLAPTVPPPEWAAHWARHWERDRRPYTCALCEKTFRDPHQIYKHGLTHKQGAGAGAAEPLDKRFICDLCPESFVYMRYLHAHRARAHPEAGARALALRCGVCARQFAHLNSLRRHLRAHSGERNHLCNVCGKALSSREHLKFHIRIHTGYKPNVCKTCGKGFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHERYHSGARPYVCALCGRGFVAKGLLSMHLKTTCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-