Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00016 0.015 16.6 3.7 1 23 164 186 164 186 0.99

2 5 4.8e-05 0.0043 18.2 7.8 1 23 192 214 192 214 0.98

3 5 3.4e-07 3.1e-05 25.0 2.1 1 23 220 242 220 242 0.98

4 5 0.00026 0.024 15.9 0.0 1 23 248 270 248 270 0.96

5 5 7.4 6.8e+02 1.9 0.9 6 21 280 295 278 296 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00016	0.015	16.6	3.7	1	23	164	186	164	186	0.99
2	5	4.8e-05	0.0043	18.2	7.8	1	23	192	214	192	214	0.98
3	5	3.4e-07	3.1e-05	25.0	2.1	1	23	220	242	220	242	0.98
4	5	0.00026	0.024	15.9	0.0	1	23	248	270	248	270	0.96
5	5	7.4	6.8e+02	1.9	0.9	6	21	280	295	278	296	0.87

Coding Sequence: ATGCAGAAGGCCCTTCGGGTCGTTGAAAAGTGGTGTGAAAGCCACAGTCTCTCTGTGAACCCACAGAAGACGGAGATGGTTCTGTTCACcaggaaaattaaaataacaggaCTAAAACTTCCGACTTTGTTTGGTACACAGTTGACCCTcagtaaggaagtaaaatatctagGCATTTGGTtagacaGTGTGTCCGTGAGACCACTTTCGACCATGCGTCAGGAATCCCTCCCGATGCTGGCGGAGCGGCTGCTGGCGACGCGCGCTGCTGCGCTGGTGGCGGGGCTGCCGGCCGAGCTGTACTCGGGTGCGCTGCTGGCCGCGTGGCCACCGTCACCACCCACGCCGCTGCTGCCTCCACCCGAGCAGGAGCGCGCGCGCAGGCGACGCCGCACGCCTAAGCTCGACGACACCGCCACCTCCGCGCCACCATCGCCACCCTCCTCGGGCTCCTCACCCGGCGCCGCCGACCCGCCACGCGATAAACTCTTCACGTGCAAGGTCTGTTCCCGCTCGTTTGGATACAAGCACGTTCTCCAGAACCACGAGCGGACCCACACTGGCGAGAAGCCGTTCGAGTGCGGTGAGTGTCACAAGCGGTTTACGCGCGACCACCACCTGAAGACACACCTTAGGTTGCACACGGGCGAGAAGCCTTACAGCTGCCCGCACTGTCCACGCCACTTCGTGCAAGTCGCTAACCTGAGGCGGCACCTCCGTGTGCACACGGGTGAGCGACCGTACGCTTGCGCGCGCTGCCCGGCGCGGTTCTCCGACTCCAACCAGCTGAAGGCACACGCGTTGGTACACGAGGGTGACGCGCCCTTCGCTTGCCGGTGCGGCGCCAGGTTCCGGCGGCGGCAGGCGGCCGCGCTGCATCGCTGCACCGGCGCAGGCTGCGAGCCGGACACGCCGAGCCCGCCAGTCGCGGCCGCCGCAGATTGGCGCTGGGACGAGTGGCCCGAGCAGACGGAGCCCGAGGACCTGTCGCTGCCCCGGCGGCCGGCGACGCCGGACTCGCCCACGGACCTGCGCATGCACTCCGCGTAG
Protein Sequence: MQKALRVVEKWCESHSLSVNPQKTEMVLFTRKIKITGLKLPTLFGTQLTLSKEVKYLGIWLDSVSVRPLSTMRQESLPMLAERLLATRAAALVAGLPAELYSGALLAAWPPSPPTPLLPPPEQERARRRRRTPKLDDTATSAPPSPPSSGSSPGAADPPRDKLFTCKVCSRSFGYKHVLQNHERTHTGEKPFECGECHKRFTRDHHLKTHLRLHTGEKPYSCPHCPRHFVQVANLRRHLRVHTGERPYACARCPARFSDSNQLKAHALVHEGDAPFACRCGARFRRRQAAALHRCTGAGCEPDTPSPPVAAAADWRWDEWPEQTEPEDLSLPRRPATPDSPTDLRMHSA

Sequence clustering based on sequence similarity using MMseqs2