Basic Information

Gene Symbol
-
Assembly
GCA_963580505.1
Location
OY757005.1:2547145-2558039[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.68 62 5.2 4.5 1 22 94 115 94 119 0.94
2 35 1.2 1.1e+02 4.4 2.2 3 23 144 164 143 164 0.96
3 35 1.1 1e+02 4.5 0.2 3 23 188 208 186 208 0.95
4 35 0.025 2.3 9.7 0.2 1 23 212 234 212 234 0.95
5 35 0.031 2.9 9.4 0.1 1 19 239 257 239 262 0.79
6 35 0.01 0.92 10.9 2.8 1 23 268 291 268 291 0.95
7 35 0.016 1.4 10.3 3.0 1 23 298 321 298 321 0.96
8 35 5.1e-07 4.7e-05 24.4 1.3 1 23 328 350 328 350 0.98
9 35 1e-05 0.00094 20.3 0.5 1 23 356 378 356 378 0.98
10 35 4.8e-06 0.00044 21.4 0.4 1 23 384 406 384 406 0.97
11 35 0.00084 0.077 14.3 0.3 1 23 409 432 409 432 0.91
12 35 0.66 60 5.2 0.1 6 23 438 455 437 455 0.96
13 35 0.02 1.8 10.0 0.3 1 23 458 481 458 481 0.91
14 35 0.00048 0.044 15.1 0.7 1 23 507 530 507 530 0.97
15 35 8.5 7.8e+02 1.7 0.0 6 20 536 550 535 553 0.93
16 35 0.006 0.55 11.6 0.2 1 23 628 651 628 651 0.95
17 35 2.7 2.5e+02 3.3 0.2 2 23 678 699 677 699 0.95
18 35 1.2 1.1e+02 4.4 5.9 1 23 721 743 721 743 0.98
19 35 0.00036 0.033 15.5 0.5 1 20 747 766 747 768 0.95
20 35 1.8 1.6e+02 3.9 0.2 1 23 778 801 778 801 0.93
21 35 0.12 11 7.5 0.6 1 23 855 877 855 877 0.97
22 35 0.0093 0.85 11.0 0.1 2 23 901 923 900 923 0.93
23 35 0.014 1.3 10.5 0.8 2 23 946 967 945 967 0.97
24 35 6.8e-05 0.0062 17.8 0.3 1 23 971 993 971 993 0.98
25 35 1.3 1.2e+02 4.3 0.2 1 23 998 1021 998 1021 0.93
26 35 0.042 3.8 9.0 2.6 1 23 1027 1050 1027 1050 0.95
27 35 0.026 2.4 9.6 1.3 1 23 1056 1079 1056 1079 0.95
28 35 0.00041 0.038 15.3 0.6 1 23 1210 1232 1210 1232 0.98
29 35 7e-05 0.0064 17.7 0.5 2 23 1237 1259 1236 1259 0.94
30 35 0.0099 0.9 10.9 1.7 2 23 1268 1290 1267 1290 0.93
31 35 0.00093 0.085 14.2 3.4 1 23 1295 1318 1295 1318 0.96
32 35 2 1.9e+02 3.7 2.5 1 23 1324 1347 1324 1347 0.95
33 35 4.1e-05 0.0038 18.4 0.2 1 23 1353 1375 1353 1375 0.97
34 35 1e-05 0.00095 20.3 2.9 1 23 1381 1403 1381 1403 0.98
35 35 0.0012 0.11 13.8 6.8 1 23 1409 1431 1409 1432 0.95

Sequence Information

Coding Sequence
ATGTCAAGATCTTTTAAGCGTACAGCTAGAGgAAAACATGGACATAGAAGCATTGATACATTCACcgcgatagaaaaaaataaagaaagtgGTTTTGATACGCTTGCTACGATAGAAGAAATTGGGGAACCCCATGTAAATGTTCAGGTTTCTGAAGACAAGAAAAAACCCAAGTACCAGAGAAGTGCGAGGGCTGATGCAAGGATCGCTACGAAGAGAAACGCAGTTTCTATTTTAGAATGCTGGACATTCTGTCCGTTCAGATGGATCACGAATAGGTTCAAATGTGCTTACTGTGACAACGAATTTACAGAATGCACCTTTCTTAGAGATCACGTTCGGATTTGCTCAACTCATCACAATATCAATGATGTTTACAACAAGTTCAGAGAAATGCCGCTCATCAATATCGACGTCACCGATGCCATCTGCTGTCTCTGCTCAACCCCTTTTGTGAACGTTACTCATATGCGCGATCATGTCATTAAGCACGGACTCGAATTTGACACTAAACATCCCGATGGCGTATTGCCTTTCTCGTTAGACAAAGACTCTTGGGCTTGCGTGATATGCCAGGACAAGTTCAACAACTTTCTCAAATTGTATGAGCATATGAATATACACTACCAGCATTATATATGTTATATTTGCGGAAAGGGATATATGACAGCGCTCCGACTGCGAAAGCATTCTGAAGTGCATATATCAGGATCGTTTCCTTGTAACATATGCGGCAAAAAGTTTGCTATGCGCGCCGCAAGAGACGCTCACAAGGCGGCCTCGCACCAAAAATGCCCCCGCTACGAATGCCCACATTGCTACACCCGTTTCAGTAGTTATTACGATAGAATGACGCACTTAAAAGATGTTCACAGCGAAAAGGCAGTTGGTTACAAATGTTTCCATTGCGACTTATCGTTCAAAACGAGCGGGATCCGTGCAACTCACATGCGGTCTAATCATTTCGCTCCTCAAACCAAGTTCAAGTGCACGGAGTGTGACTGGATTTTCAAAACCAATTATGAACTAAAGAGGCATATGGTTagacacactggagaaaaaaactttaaatgtGACGCGTGTGGCAAGGCCTTTACGAGAAGAAAGGCTTTAGTCACTCATATGGTTAAACACACTGGAGAAATAAACTATAACTGTAATGTGTGTGATAAGTCCTTTgcgaaaaaaaatgctttagcTACTCACATGAAAGCGCACCAAGTTTTCAAATGCAAGTGGTGTGGAGTAAACTTTGAGCAGAGGAGTCTGTTGGAAGATCATTCGCTGCTAAGTCATTCGGAACTGTCGGCGTGTTACGAGTCCTTTTCGAGAAAAAAGGTTTTAGCTACTCATGTGAAGGCGCACCAACATTTCAAATGCAAGTGGTGTGCTCTTGTTTTCGAGCAGAAGAGACTGCTGGAAGATCATTCGCTGTTAAGTCATCAGGGGCTGTCTGCATGTGACGAGTCCATTACGACAGATAAGGTTTTAGCTACACATGTGAATCCGCGTCAAATTTTCAGATGCAAGTGGTGTGGACTAGATTTCGAGGAGAATAGCCTTTTGGAACATCATTTGCTGTCAAGTCACCCGGAACTTACTGCATGTGTCGAGTCCTTTACGAGAGAAAAGGTTTTAGAATCACATATGGATCCGCATCAAGgTTCCAATAAAGAAGCTCAGAGTAGTGTAGGCGCGGTTGAAAAGGGTAGGAAGTTAAAAGAAAATGTTAGCGCTCGACAAATGCGTCGGAGACGTCGTGCTAATAACCAGTTGGCTGAAGAATCTGAAAAGAGAATCTCGAAAACTATGATGAGACGAAACGCGATCACACTTCTGGAATGTTCCACAGCCTGGGCCTTCCGGTGGTTCCACGGCGCGTTCTACTGTTCTTATTGTGATGCCAAATATGTGGATGCACAACTATTGAGAGAACACGTCACTGTAACCCATTTAAACCCACCACCATCCAATCGCATCTTTGCGAAACTAACCGAAAATAACATGGTCAAAATAGATATTACCGACCTTCGGTGTAGGCTTTGCAATCTTCCTCTAAACGGTATCGACTCTCTTAAATACCATGTTCAGTCTCACGGTAGAAACATGTATGAAGGCTACAGCGACGGTGTATTACCTTTTAAACTTACCGACGAAGGATACTGCTGTCAAATATGTTCATGTCACTTTATTAGCTTCGCAAAAATTAatgaacatatgaacatacactATCAGAACTACGTTTGTGATACTTGTGGAAAAGGTTTTATATCGAAATCTCGGTTTAGGAGTCACATCCACGCTGGAAACAATACGAATGAAGACGGGAGCTATCCATGTGGCATCTGCGAGGAGATACTAAATACTAGAGCAGAAAGAAACATGCACAGATTACACATTCATAGAAAAGgaTTGGACCGCCCCGATTGTGACACCCCGTCGTCCACAAACGCTCCCAAAATCGTTTGGAAGCGAAAACGGATACTATTCGAAGACAAAGCCAACGCAGCTTTGATCTTGGAGCACTCTAATGCTGTAGTTTTCAGATGGCATAGAGGAAAATTCATGTGTGCATACTGCTCAGAAATATACAACAACATATATGACATGCGATCGCATTCTTCCACACACAACAAGCTGGACATATTTGAGAATCAAGTCCGCCAGCAGTTTCCTCTTAAAGTAGACATAACTGACTTATCTTGTACTGTTTGTGGCACTCCCACAAGCAACGTCGAAGATTTAAAAGTTCACTTATCTAATGTACATTGCAAAACGGTCGATCAAAATTATGCGGATGGCATCATACCCTTCTATTTAACGGGAAAAGAGCTAAGATGCGTCATTTGCGATGTGCAATTTGATAAGTTTATGACTCTATTCAACCATATGAACAAACACTATCCGAGTTTTGTATGCGATACTTGCGGAAAGGCCTACTCGGGTCAGAACAAACTGCGTTCACACCAGGCTATGCATAAGACTGGGGAGTTCAAATGCACGCGATGTGATTTGATTTTACCAAATCGATTAGCTAGGAACCGTCATTTGAACGACGCCCACGGTTCCAAAGAGAGATACCGCTGTCCTATTTGCGATAGCCACTTCGACTCGTATCATAGCCGTTTAAGGCACTTAAATGCGGTTCATGGAGAGAAAACTGAGTATAAGTGCACGTATTGCCCAGCGGTGTTTATCAGCTGTACTTCTAGATATTCTCATATAAACGGTGTACATTTGCggcCCGCCACGTTCACTGTAAAATGGAGGCCCGTGCGCAAGTATAACGACGAGAGAGACAATGCGGCTATAATTCTAGAATGTTCAAATGTTTGTCCGTTCAAATGGAAACAGGGTACATTTTGTTGTTCGTACTGCACGTTTATCTCGGCTGATTTCGGTCCTATTAGGGAACACGTCAGTGAACATCTGAACAAGGTCGAAGCCTTACGACTGGCGCGAGGTTCCACGATCAAGGCTGATGTTACGGATTTAAAATGTGAACTCTGCCTTGGGAACATAAAAGATATACCGACATTAGTCGATCATTTAATCGAAGTGCATTGTAAACCTCTTAATAAGAGATACGGTCCTGGCATTGTTCCTTTCATTCTCAACGAGGATGTGTTCAAATGCTCTGTATGTGACCTCACATTCGATTTGTTCGTCAACTTGAACAAACATTTAAACGAGCATTACCCTAATAGTGTATGTTCATTATGCGGCAAATCCTTTTCACAATTGACTAGACTGAAAGCACATATACTTTACACGCATGAAAAACAAAGACAGATGCGCTGCGCATGCACGAAATGCGGTGAAACCTTCACCAACATACccgataaaaataaacatatggTCTCTAAACATGGAGTCCTGAAACACAGGTGTCCCTATTGCAACGAGTCTTTCAAATCATACCCAAGCAGAATGAAACATATGAAGGAATAtcatgataaaaaaatagaatatcgTTGCAATATGTGCTCGGCTGTATTCTTATTATGCAGTCAAAGAACTAAGCATATAAAACAAGTGCATATCAAAGATAAACGATTTGCATGCACGGTATGCCCGTTTCGCTTCGTGACAGCTGCATCATTGAGGAATCACATGATAAAGCACGGTGGAGAGCGGAAGCACCAGTGTCAAGTTTGCAAAAAGGCTTACGCGAGGAAGAAGACGTTGAAAGAACACATGCGAATACATAACAACGATAAGAGGTTTATTTGTACACATTGCAATAGCGCGTTCGTGCAGAACTGCAGTTTAAAGAGTCATATTAGAACACACCATTCCAATATTTGCAATGCTGCACTTTTGCCTTCGGAAAGGTTATAA
Protein Sequence
MSRSFKRTARGKHGHRSIDTFTAIEKNKESGFDTLATIEEIGEPHVNVQVSEDKKKPKYQRSARADARIATKRNAVSILECWTFCPFRWITNRFKCAYCDNEFTECTFLRDHVRICSTHHNINDVYNKFREMPLINIDVTDAICCLCSTPFVNVTHMRDHVIKHGLEFDTKHPDGVLPFSLDKDSWACVICQDKFNNFLKLYEHMNIHYQHYICYICGKGYMTALRLRKHSEVHISGSFPCNICGKKFAMRAARDAHKAASHQKCPRYECPHCYTRFSSYYDRMTHLKDVHSEKAVGYKCFHCDLSFKTSGIRATHMRSNHFAPQTKFKCTECDWIFKTNYELKRHMVRHTGEKNFKCDACGKAFTRRKALVTHMVKHTGEINYNCNVCDKSFAKKNALATHMKAHQVFKCKWCGVNFEQRSLLEDHSLLSHSELSACYESFSRKKVLATHVKAHQHFKCKWCALVFEQKRLLEDHSLLSHQGLSACDESITTDKVLATHVNPRQIFRCKWCGLDFEENSLLEHHLLSSHPELTACVESFTREKVLESHMDPHQGSNKEAQSSVGAVEKGRKLKENVSARQMRRRRRANNQLAEESEKRISKTMMRRNAITLLECSTAWAFRWFHGAFYCSYCDAKYVDAQLLREHVTVTHLNPPPSNRIFAKLTENNMVKIDITDLRCRLCNLPLNGIDSLKYHVQSHGRNMYEGYSDGVLPFKLTDEGYCCQICSCHFISFAKINEHMNIHYQNYVCDTCGKGFISKSRFRSHIHAGNNTNEDGSYPCGICEEILNTRAERNMHRLHIHRKGLDRPDCDTPSSTNAPKIVWKRKRILFEDKANAALILEHSNAVVFRWHRGKFMCAYCSEIYNNIYDMRSHSSTHNKLDIFENQVRQQFPLKVDITDLSCTVCGTPTSNVEDLKVHLSNVHCKTVDQNYADGIIPFYLTGKELRCVICDVQFDKFMTLFNHMNKHYPSFVCDTCGKAYSGQNKLRSHQAMHKTGEFKCTRCDLILPNRLARNRHLNDAHGSKERYRCPICDSHFDSYHSRLRHLNAVHGEKTEYKCTYCPAVFISCTSRYSHINGVHLRPATFTVKWRPVRKYNDERDNAAIILECSNVCPFKWKQGTFCCSYCTFISADFGPIREHVSEHLNKVEALRLARGSTIKADVTDLKCELCLGNIKDIPTLVDHLIEVHCKPLNKRYGPGIVPFILNEDVFKCSVCDLTFDLFVNLNKHLNEHYPNSVCSLCGKSFSQLTRLKAHILYTHEKQRQMRCACTKCGETFTNIPDKNKHMVSKHGVLKHRCPYCNESFKSYPSRMKHMKEYHDKKIEYRCNMCSAVFLLCSQRTKHIKQVHIKDKRFACTVCPFRFVTAASLRNHMIKHGGERKHQCQVCKKAYARKKTLKEHMRIHNNDKRFICTHCNSAFVQNCSLKSHIRTHHSNICNAALLPSERL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-