Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.065 1.1e+02 3.5 0.0 28 39 5 16 4 19 0.86

2 3 2.6e-16 4.3e-13 49.6 0.2 2 45 34 78 33 78 0.96

3 3 1.2e-18 1.9e-15 57.1 0.0 1 41 85 126 85 130 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.065	1.1e+02	3.5	0.0	28	39	5	16	4	19	0.86
2	3	2.6e-16	4.3e-13	49.6	0.2	2	45	34	78	33	78	0.96
3	3	1.2e-18	1.9e-15	57.1	0.0	1	41	85	126	85	130	0.94

Coding Sequence: atgtcgaataGCATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCCGTGTCGTGGCGGCGCGGCGACCTGgcgcgcgcgctcgccgccATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTACGGGATACCCACCGGGACTCTCTACGGAAGATGTAAACGAGAAGGCATAGAACTGTCTCGTTCCAACCCCACGCCTTGGTCTGAAGATGCCATGGGAGAAGCTTTAGAAGCAGTCAGAGTTGGCCAGATGTCGATAAATCAAGCAGCTATCCATTACAACCTGCCTTACTCATCCCTTTACGGAAGATTTAAGAGATGCAAATATTTAGCCCAGCCTCAGCAAACGCTACCGCAAGAACTAGGAAATAATCAAGAAGTGGCGACTAATCAGCGACAAGAGCTAACCTACTATAACCATCCCAACCACATGTCACACCAGTCACACATGCATCCTGAACCAGAACGTACCATTGATGTCACCCAAAACCAATACACACAGGAGTATGTTCAGAATCCAAGCCATACTAACGTACAAGACACGTACGTCGGACAAACTATATATTACAACCAAAGCTTTAACAGTATCGCTACCAGCTGA
Protein Sequence: MSNSIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAQPQQTLPQELGNNQEVATNQRQELTYYNHPNHMSHQSHMHPEPERTIDVTQNQYTQEYVQNPSHTNVQDTYVGQTIYYNQSFNSIATS

Sequence clustering based on sequence similarity using MMseqs2