Efla018641.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- ZIPIC
- Assembly
- GCA_905163395.1
- Location
- LR990857.1:723665-731560[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.5 8e+02 1.7 1.2 3 21 456 474 454 478 0.90 2 13 6.7 5.6e+02 2.2 2.9 2 22 500 520 499 523 0.88 3 13 0.0025 0.21 13.0 1.3 3 23 539 560 538 560 0.97 4 13 0.0019 0.16 13.4 1.0 1 23 565 589 565 589 0.92 5 13 1.5 1.3e+02 4.3 0.7 2 23 610 634 609 634 0.85 6 13 0.0076 0.64 11.5 0.1 2 21 640 659 639 660 0.95 7 13 0.00056 0.047 15.0 0.2 1 23 719 740 719 740 0.98 8 13 4.7e-06 0.0004 21.6 1.3 1 23 746 769 746 769 0.98 9 13 0.028 2.4 9.7 5.6 1 19 781 799 781 801 0.96 10 13 2.7 2.3e+02 3.4 0.1 3 23 809 831 808 831 0.90 11 13 0.018 1.5 10.3 7.3 1 20 838 857 838 860 0.94 12 13 0.23 19 6.8 7.2 1 23 866 889 866 889 0.94 13 13 0.71 60 5.3 0.1 1 23 895 918 895 918 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCGCCCAACGCGGGGGATGACGAGGACGATGACAGCCACCTGTGCATCAAATGCAACATCACCATCGTGGGCCTCGACAACTACGTCAAGCACAGAAAAGAGAGGTGTGGGAAGATCTCCAAAAGTGAAGCTTCCAAAACGGACATTTCTCACATGGACACCTTAGAACCCACTTACAGTCTTGGAGCTGATGTTTTCTTCCAATCGCTAGAATTGCAGAGCAGTGTTAAAAAAACCTCTCTGTCAAGATTGACGCCACCTATACCCATTTCTAAAGCGGTCATTGATACAAAAACCACTTTAGTAGAAGCGTCTACTTCCAGAGAATTACCTAGAATGAGTCCCTTAGAGAGTAATTTAAGAGGAGAGGATTGGATTGGAGGACATAGTTTAAGAATTGGCATCAATGAAGATAATCAAACAAAACTGATCAACGCTGTCGCAAGTATTAGTGGTACTGTCAAAAAGGACATGCCAACTTCGTCGTATAATATCAGTTACAACGATTATAAAGGTGATGAGGATTTTGATGAGTCTGAAGATTCTGAAGACGATGACGAGGATGAAGCCCATGGTAGCGGAGGGAAATGGAAACCTCCTATCAATTATACTGGAGGAAAATGGCGTCCAGCATCTCCAGAACTTGAAGAATGGCATGTGAGAGATGAGCAGGAACATACAAGCGATAAATGGAAGCAGTTTGAGAGAGAAGATGACTATGATGCTCCACCACCTGGACACACTAAAGGTAAATGGGTGCCTGGACATGACAAAACACAGATTATGCAAACCACTATACAGACAAAAGGATCTGTCCAATACTGGTGCGGTCCTTGCAATAGACGGTTGGGTTCGAGAGCTATTTACGACAAACACCTTATGTCGAGTTTGCATATGAGGAAAATTCTCCCCGAACACGAACTAGAGTTTTCTGGACATTTACAGCCAATGAGAAATATTACGAAGCGAACAAGTCGACCCTCAAGATTTTTAAATGACAGCATTTATTCTAACTTACAAAAGAAAAGAAAGTCTACTAAAAAGGTTAACGTTAAAATTCAAAAGAAGAAACGTAAAAGGAAACCTTTTTTCCTTCATTGCCATGGTTGCAAGTCCAGAGTGAAGAAACACTTGATGGGAAAACATTTAATCTCACATTATCACTTCAGAAAAGCCACTGACACCCAAAGTACCGATTATAAACAATTGATTCTAGACAATATAGACGCAATTGTCCATCAATCGCCATTTCAATGCAGTCCATGCAAGTTTTACACTAATTGGCTGTCAAATTTCATGCAACATTGGCACACTAAAGAACATAATGAAAAAATGGCTGCTACCGATGGCAAATATTGGTGTTCGTTCTGCAAGTTTGAATGTGACACTTCCCAGGATATGCTCGATCATATGTCAGGTTCTGAGCACAGCGAAGTTGTGGCTGTTATTAATAGATCAATGCCTATAATAATACGAAAGAAAAGTGTGTTGAGATGCGAGACGTGTTGTAAAGAGTTCAGGTATAATATAGAAATGAAACAACATTCTCAGAAGACTGGACATCCATTGGCGCACACAGCAACTGATAGTTATCAGGAGCTCAACAATTGTCAGTATTGTAAAGCGAAATTTAAATCATCGTTGACACTTGCTGCTCATTTAAAGACGAAACATAAGCAAAGAGCATTTTTCTGTTTGGTATGTAGCAAATCGTTCAACTCTTCGGAGGAAGCACAACGTCATCGACAAACATCTGAGCATAGAGTAAGAAGGAAGGAAAACTTAAAAGAAAAAGGAGTTCCGATAAAGGACTTGAGTAAGAAATGCCCGTATTGTACTGAAACTACTATATTGAAAAATGTCATAGAACTAAAAGATCACATAAGGAAAGTTCATCCACAAATCAAAAAGAAATGTCCAAAATGCGGTATGGCGTTCATCCTATCCCAGGAAGTGACCAGACATGTACGCAACAATGCCTGTCAGTTCCAAGCATACAGCCCTCGCAGCTCCTCAATCCTCTGGAACTGCAGCCAATGTTTATTCACAACAAATTCCCAAGCCGAATGCTTTTACCACGAAGTACTCCATACGACTTCTATCAAGGAGACACGTAAGATAGGAAATAAGGAGAAGGTATTTGAAAAATACGAGTGTCCGGTCTGCGCGAAGATTTTCAAGAAGGCCTCCTTACGACTACACATCAGGCAACATACGTCTGAAAGGCCTTTTGTATGTCCTATCTGCAATGCTAACTTCACAAGACTCTCAAGTTTGAATAACCATCATAAAACCGAGCATGGGACATCAAAGACACAGCAAAAACCGATCGGTTTCAAATGTGCCAAATGTACGAAGACTTGTAGTACCAGGACATCTCTTGCACGTCACTCCTGCGGCGACATCAGCTCACGGAGTTGTTCATACGAGCAGTGCGAATACGTCGCAGCCAGTCCTGCACAACTTGTCAAACACAGCCACGTTCACGGAGAGCCTATAAAGCGACACGAGTGCCATCTGTGTGACTTCAAAACCAATCAGGCTAGTCATTTGAAGAGGCACATGATATGTCATGAGGGAATGAAGCCATACGCGTGCCCACACTGCCAGTTCACTTGTGGGAGTCTGGAAAATCTCCGAAAACACTGCCGCCGTAGACACCCAGGGGAGTTTCTCTACAAATGTGACTCTTGTGCCTTCAATACTAACTTGGCAACTGAGCTACGTGTGCACTTGGCTACCATTCATTCTGCCAAGTTCGACGCCAAGTCAGCGAAACAAGCCGTGAAGATACACCTTATGACAGACGAGGCCAAAAAACTTGAGACTGAATAA
- Protein Sequence
- MLSPNAGDDEDDDSHLCIKCNITIVGLDNYVKHRKERCGKISKSEASKTDISHMDTLEPTYSLGADVFFQSLELQSSVKKTSLSRLTPPIPISKAVIDTKTTLVEASTSRELPRMSPLESNLRGEDWIGGHSLRIGINEDNQTKLINAVASISGTVKKDMPTSSYNISYNDYKGDEDFDESEDSEDDDEDEAHGSGGKWKPPINYTGGKWRPASPELEEWHVRDEQEHTSDKWKQFEREDDYDAPPPGHTKGKWVPGHDKTQIMQTTIQTKGSVQYWCGPCNRRLGSRAIYDKHLMSSLHMRKILPEHELEFSGHLQPMRNITKRTSRPSRFLNDSIYSNLQKKRKSTKKVNVKIQKKKRKRKPFFLHCHGCKSRVKKHLMGKHLISHYHFRKATDTQSTDYKQLILDNIDAIVHQSPFQCSPCKFYTNWLSNFMQHWHTKEHNEKMAATDGKYWCSFCKFECDTSQDMLDHMSGSEHSEVVAVINRSMPIIIRKKSVLRCETCCKEFRYNIEMKQHSQKTGHPLAHTATDSYQELNNCQYCKAKFKSSLTLAAHLKTKHKQRAFFCLVCSKSFNSSEEAQRHRQTSEHRVRRKENLKEKGVPIKDLSKKCPYCTETTILKNVIELKDHIRKVHPQIKKKCPKCGMAFILSQEVTRHVRNNACQFQAYSPRSSSILWNCSQCLFTTNSQAECFYHEVLHTTSIKETRKIGNKEKVFEKYECPVCAKIFKKASLRLHIRQHTSERPFVCPICNANFTRLSSLNNHHKTEHGTSKTQQKPIGFKCAKCTKTCSTRTSLARHSCGDISSRSCSYEQCEYVAASPAQLVKHSHVHGEPIKRHECHLCDFKTNQASHLKRHMICHEGMKPYACPHCQFTCGSLENLRKHCRRRHPGEFLYKCDSCAFNTNLATELRVHLATIHSAKFDAKSAKQAVKIHLMTDEAKKLETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -