Basic Information

Insect: Endotricha flammealis
Gene Symbol: ush
Assembly: GCA_905163395.1
Location: LR990856.1:2163284-2169057[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0072 0.61 11.5 0.2 1 20 130 149 130 151 0.94

2 9 0.00011 0.0091 17.3 0.9 1 23 190 212 190 212 0.98

3 9 0.084 7.1 8.2 0.3 3 20 244 261 243 263 0.93

4 9 0.024 2 9.9 3.9 2 21 504 523 503 524 0.95

5 9 0.0073 0.62 11.5 0.2 3 20 553 570 551 572 0.90

6 9 1.5 1.3e+02 4.2 0.0 2 23 600 621 599 621 0.94

7 9 0.011 0.9 11.0 1.3 1 23 627 649 627 649 0.99

8 9 0.94 79 4.9 0.7 1 23 688 711 688 711 0.95

9 9 0.23 19 6.8 0.7 2 20 745 763 745 765 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0072	0.61	11.5	0.2	1	20	130	149	130	151	0.94
2	9	0.00011	0.0091	17.3	0.9	1	23	190	212	190	212	0.98
3	9	0.084	7.1	8.2	0.3	3	20	244	261	243	263	0.93
4	9	0.024	2	9.9	3.9	2	21	504	523	503	524	0.95
5	9	0.0073	0.62	11.5	0.2	3	20	553	570	551	572	0.90
6	9	1.5	1.3e+02	4.2	0.0	2	23	600	621	599	621	0.94
7	9	0.011	0.9	11.0	1.3	1	23	627	649	627	649	0.99
8	9	0.94	79	4.9	0.7	1	23	688	711	688	711	0.95
9	9	0.23	19	6.8	0.7	2	20	745	763	745	765	0.92

Sequence Information

Coding Sequence: ATGTGTCATGGACCTGATGATGCCAATATAAACTTTGAAGTATCCCATATTGTAGTCTCCTGGATAGACGTGGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGAACGCCGAGCTCAGGGGGCGAGAGGGCCGCGTCCAGCGGAGGAGCGTCGCCAGCGTCTGCGGGATCCCCGGCAGCCTCGCCGCCGCGACTTCGCCTCAACACCAGTCTCGCTACAGACCCCGCGCTTGCGCCACAAGCGGCGCCGCTGAAGCATGAACCACCGTCGCCGTCGCCACCACCACCCCCGACGGCGCCACAAACAAGACAAGATTTCTTGGCTTTAACAGCCAGCTTCCCGCTATTTCCAGCAACACCTCCTGGGTATATGTGCAAGCCATGTGGCATTCGTTACTCATCTTTGAGTACGTTGCAAGCACATCAAGAACATTATTGTTCAAACAGAAGGCCGAAACCTACAGAAGGTGGCGATGCATCCACCGATCCTGCGGCCGATGAATCTAGCAGCGACGCAAAAACGCCTCGGCCACCAGGCGGAAAGCAGTACGCTTGTACTTATTGCTCATATAGCGCTGACAAGAAAGTTAGTTTGAATCGCCATATGCGAATGCATTCTTCATCGCCAGTTAGTAGCGGAACGCCAGCGCCAACAACCCCCGCGTTAAATGGCGAAGCTGCCGAGGGTCCACAAATACAGGACCGCTATTGTGCAGATTGTGATATTCGCTTCAGCTCAATTAAAACTTATCGAGCACATAAAGCCCACTATTGTAACACAAGACAAGTTGTAAAACAAGCTTTGGCCATGGCCAGAGGTGGGTCAGCAACTTCAGGATCTGCGCCACCGTCTCCTGGTGCCACACCTCCAGCTCAAAACCAGTACGCACTTGCGTTACCTACTAATCCTATTTTAATAGTGCCGTATTCACTTCTAAGAAGTGCGAGCACTCTACCTGGAGCTACGTTGCCAGATCCGGACACCCCTTGTTTCCTCTTACCAAATGGTACATTTCAACCACTAAGCCGTGCTTTACCAAACCTAAGTACGGATGGGAAAGAGACAGAAGTTTTGAAATCTGCAAACAGGCCTCGAGAGCCATCAAGGGATGCCGCTACTCCATTGGATCTGAGCGTGAGACGTTCGCCAGAGTCGGCAACAACAGATGAACACGAGAAAGAAAATAGGATAAGATCAGCGACTCCTGAACAGATAGTTTGTGCTCCCTCATTACCTGGGTCGCCTGGTACACCATCGCCATCACGACGATCATCGTCGCCAAGTGCAGAGAGTTCTCCAAAGCGAAGACGACGTAATTCTAGGGGACCCACACCGAAACCGACAAGCGTACCGTCACCGCCGGAGGAAAAGTATACACAAGCAATTGCTGCGCCAATTTTACCGTTAGCGCTGAGACTAGCGTCAGAACTGCCCGTGACGGCTGCATCACCACTAACCACCCAAGTCATAGTCAAACAAGGAGTGTCAAAGTGTAAAGAATGCAATATTGTCTTCTGCAAGTATGAGAACTATCGTATCCACAAGCGGCATTACTGCTCATCTGGTGGTGGGGAGGACAGAGCAAGTCCTGCGCCCCCAGAACCAGGTCCGCCGCCTCAGTATCGTCAACTGATTTGCTTAGCATGCGGTATTCACTTCAGTTCGCTAGATAACTTAACGACTCATCAATCGTACTATTGTACCAAGAGGGAAACTCGTTCACCTAGAAGTGTCCCGGAGGTTCCCAGGCCTGCATCAGGGTCAGAGGGCGGTTGGAAGTGTCCCTGCTGTGATGTGGTGTCACCGACCGCTGCAGCTGCCCAGCGGCACATGGAAGCCCACGCTGGTGTCAAGGCATTCCGATGTACAATTTGCAGATACAGAGGAAACACTCTTCGCGGTATGCGGACGCATATTCGCATGCATTTCAACAATAAAAAGCCAGCTGATTTGCAGGAGGAAAGCTATATCGCATGCGTTCTAGAGGAAGACAATCGCGAAGTGACGTCACCAAGTCCAGCAGTGGGGGGCGAACGCATACACCGCTGTGGGAGTTGCGCTTACACCTCCACGTATAGAGGCAATGTCGTCAGACACGGGCGCTTAGTCCACGCCATAGACGAACCAGAACAGGAGGAACAAACCTCCCCCCCAATCCCCGCTGTAGACATCAAGAAGGAACCAGAGACAGAAACGGAAGAAACACCCAATTACTGCAAATCTTGCGACATATCATTCAAATACGTCAACACTTATAAAGCCCACAAGCAGTTCTACTGCACGGCCAATAACCAAGACGCCACAGCCAATAATAACGTCCCGGCGCCCCCACCAACCGCCCGAGTCAACGATACTCCCGTGCTATGA
Protein Sequence: MCHGPDDANINFEVSHIVVSWIDVGEDEEWGNESEAMPGEPRTPSSGGERAASSGGASPASAGSPAASPPRLRLNTSLATDPALAPQAAPLKHEPPSPSPPPPPTAPQTRQDFLALTASFPLFPATPPGYMCKPCGIRYSSLSTLQAHQEHYCSNRRPKPTEGGDASTDPAADESSSDAKTPRPPGGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTTPALNGEAAEGPQIQDRYCADCDIRFSSIKTYRAHKAHYCNTRQVVKQALAMARGGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGATLPDPDTPCFLLPNGTFQPLSRALPNLSTDGKETEVLKSANRPREPSRDAATPLDLSVRRSPESATTDEHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRRNSRGPTPKPTSVPSPPEEKYTQAIAAPILPLALRLASELPVTAASPLTTQVIVKQGVSKCKECNIVFCKYENYRIHKRHYCSSGGGEDRASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRSVPEVPRPASGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDNREVTSPSPAVGGERIHRCGSCAYTSTYRGNVVRHGRLVHAIDEPEQEEQTSPPIPAVDIKKEPETETEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPAPPPTARVNDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00833614; iTF_00008461; iTF_00737035; iTF_00012494; iTF_01221072; iTF_00652235; iTF_00073301; iTF_00146892; iTF_00720826; iTF_01302869; iTF_00640950; iTF_00013598;
80% Identity: -