Efla028801.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990869.1:12479290-12488641[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0044 0.37 12.2 1.0 2 23 423 444 422 444 0.95 2 10 5.8 4.9e+02 2.4 0.6 2 23 452 474 452 474 0.89 3 10 0.07 6 8.4 6.9 1 23 478 500 478 500 0.97 4 10 0.00034 0.029 15.7 1.0 1 23 532 555 532 555 0.94 5 10 2.5 2.1e+02 3.5 0.3 2 22 568 588 567 592 0.88 6 10 0.029 2.5 9.6 0.5 1 23 602 625 602 625 0.93 7 10 0.0028 0.24 12.8 1.1 2 23 675 696 675 696 0.96 8 10 0.0016 0.13 13.6 0.2 2 23 702 724 701 724 0.92 9 10 0.00063 0.054 14.9 0.0 1 23 730 752 730 752 0.96 10 10 3.4e-05 0.0029 18.8 4.4 1 23 758 781 758 782 0.96
Sequence Information
- Coding Sequence
- ATGGTGGTTTATTGTTGTGTAAAAGGATGCAACAATAGCAAAAGCAAGAAGAATGATCCAAATGTTTATTTATCCTTTCATATGTTCCCGTCTAATCCTCGTCTTAGGACAAAGTGGCTTCGTGCTATAGGCAGGCCTGATTGGACACCTTCAATACACGCTCGTGTTTGCAGTGCACACTTTCGAGCTGAAAATTTAAAATATGACGGCGCTCGGAACAGGATTTCAGATGATGCCTTCCCTGTTTATGCGTTGCCCAGCTCATCGTCCTCAAATGTGGAAATGTCTCCCGTGGAGGTGTGCCGTGTCTGCCTTGCTACTGATGTGAAGATGTACAGCCTCAAACATGGAATGCTTAGCGAGTGTATAGAAAGAGTTGTTGGACTTAGTGAGTATTTCATAACAGAAGATCTGCCAGAATACGCGTGTTATGACTGCGCCGCACACGTCATTAAGTTTTACAACCTAATAAAGAAAAGTGCAGCAAGTAAAGATATACTATTTGACATGCTCACACAGAACGGTCATATAATAAAATCTTTAGTGAAACAAGTTGACAGAGAACAATTAAAACTGAAATCATCGCTCACAGCCCACGAGAGAACACCAACATATTTTTATGACTTGATATTTGATGATGAACAGAATATATCAACTGTTACTAATATAAAATATATATTCAATGATATTAAATCACTCATACCAAAAGAGGAAGATGGAAATATAACAGAATTATCAAATAATTGTGAAGATATTGTTATTGAAAATATGAAAGTTGAAGTTGACGAGAATGATTATAAAAAATCATGTAGTGATAGTGATGTATCGAAATTGAATGATGATGATGTATTTTTGAAGAATGGTGATGAGTCAGATTTAGATGATATGGATGAGTCGGATACGGAACCATTGATAGTCAAAAGTAAGAAGGGGAAGAAGTTATTAGAAATTGTGAATGATTGCAATGAAGAGAGAGTAAAAGAAGTTAAAAAACGGATGCGAAGGACATCAGTTTTAGTTGATGGCTTGACACCAAACGAAGCCATAGTGAAGGAGCACTTTAATATCGTCAAAATATCATCAGTTAATACAGTAAAAGAAGTTAAAAAACGGAAGCGAAGGACACCAGTTTTAGTTGACGGCTTGACACCGAACGAGGCCACCATGAAGGAACATTTTAATATCGTCAAAATCACATCACTAGAACAACAAACAGAGGAATGGAAGAAGATGATAGATTCGACAATGGACAGTTCAGCTAAGGTCAAGTGTGAGGTTTGCTCGAAACGGTTCAGTCACATCGCCGCTTATAGGACGCATGTTACGTTACACGACCCGAGTCGTGGCGACGCTCAGTGCCCCGTGTGCAAGATATGGTACAGGACGGAGAACAAGATGCGCTCGCACGTGGCGCACATCCACGGGCGCAAGTTCCACTGCAAATTGTGTCACAAGGTCTACTGCAGCGTGTCAGCAGCCAAGAACCACCAGTTACGCCACTTGGGCAAGTGTCTCAAGTGCGACCGGTGTCCGTTCACTGCGCTCTACATGTCGACGCTGAGCAGCCACGTGCAGCGCGAGCACGAGCACAACTTCGCCTGCGACGTGTGCGGCCGAAGCTGCGTCAGCCTGCACAGCTTGCAGCAGCATCGGGCTATAGCACACCGGGGGCAAGCTATCCCAGAGGACGGCGAGGAGGTGCGGTGCGAGCCATGTAACTTGAGCTTCCGCTCGGAGAATGCCAAACGAGTGCACCTTCTCACTGCGAAACAACATAGAGACAGCTCGAAGGCGAGCTTGGGCCACACGTGCCGCTTCTGCGGCGCGGGCTTCTCGGCGCGCCGCGAGCTGCTCGCGCACTTGACGCAGGAGCACCGCGTGCATCCGCGCGCCGAGCACGACGACTTCCCGCGCGACTGCGAACACTGCGGCGAGGCGGTGCTGACGCGGCGGGAACATTGGTGGCACATCCGCCGCCGGCACCCGGAGCAGATGGCCGCCTACCAGCCTCTGGTGGCCGCCGTCTGCGACACCTGCGGGAAGGGCTTCCAGAGCGTGACGCACCTGCGCCTGCACGAGCTGCGCCACAGCAGCCCGTCGCTGCGCTGCGACTCGTGCGGGCGAATGTTCTTCGACAAGTTCGCGCTCGCCCGGCACGAGGCCTCGGCGCATTCGGACGCGAGGCCCTACGCCTGCGCCGCCTGCCCGCGCGCCTTCAAGGTCAAGGGGAACCTCGCCAGGCACGTGCTGATACATACAGGCGAAACTCCACATGAATGTACACTATGCGGCAGGAAATTCAGACAACGGCAGAGTTTGACACTGCATGTCCGTACAGTGCATCACAAGTTGCCGCACCCGCCAAGAAAAAAGAGGAAAACAAGAACAGCAAGGGATGTCACAGTCCCGTAA
- Protein Sequence
- MVVYCCVKGCNNSKSKKNDPNVYLSFHMFPSNPRLRTKWLRAIGRPDWTPSIHARVCSAHFRAENLKYDGARNRISDDAFPVYALPSSSSSNVEMSPVEVCRVCLATDVKMYSLKHGMLSECIERVVGLSEYFITEDLPEYACYDCAAHVIKFYNLIKKSAASKDILFDMLTQNGHIIKSLVKQVDREQLKLKSSLTAHERTPTYFYDLIFDDEQNISTVTNIKYIFNDIKSLIPKEEDGNITELSNNCEDIVIENMKVEVDENDYKKSCSDSDVSKLNDDDVFLKNGDESDLDDMDESDTEPLIVKSKKGKKLLEIVNDCNEERVKEVKKRMRRTSVLVDGLTPNEAIVKEHFNIVKISSVNTVKEVKKRKRRTPVLVDGLTPNEATMKEHFNIVKITSLEQQTEEWKKMIDSTMDSSAKVKCEVCSKRFSHIAAYRTHVTLHDPSRGDAQCPVCKIWYRTENKMRSHVAHIHGRKFHCKLCHKVYCSVSAAKNHQLRHLGKCLKCDRCPFTALYMSTLSSHVQREHEHNFACDVCGRSCVSLHSLQQHRAIAHRGQAIPEDGEEVRCEPCNLSFRSENAKRVHLLTAKQHRDSSKASLGHTCRFCGAGFSARRELLAHLTQEHRVHPRAEHDDFPRDCEHCGEAVLTRREHWWHIRRRHPEQMAAYQPLVAAVCDTCGKGFQSVTHLRLHELRHSSPSLRCDSCGRMFFDKFALARHEASAHSDARPYACAACPRAFKVKGNLARHVLIHTGETPHECTLCGRKFRQRQSLTLHVRTVHHKLPHPPRKKRKTRTARDVTVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00648067;
- 90% Identity
- iTF_00648067;
- 80% Identity
- iTF_00648067;