Efla014870.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- RREB1
- Assembly
- GCA_905163395.1
- Location
- LR990876.1:5501067-5509529[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.042 3.6 9.1 0.8 1 23 82 105 82 105 0.96 2 12 8.8 7.4e+02 1.8 0.7 1 11 147 157 147 168 0.80 3 12 0.025 2.1 9.9 0.1 1 23 295 317 295 317 0.97 4 12 0.0013 0.11 13.9 0.4 1 23 326 348 326 348 0.99 5 12 0.00082 0.069 14.5 2.0 1 23 354 377 354 377 0.97 6 12 0.0033 0.28 12.6 1.6 1 23 721 744 721 744 0.96 7 12 0.00027 0.023 16.0 1.3 2 23 940 961 939 961 0.97 8 12 0.028 2.4 9.7 5.3 1 23 967 990 967 990 0.97 9 12 0.063 5.3 8.6 1.3 1 23 1023 1047 1023 1047 0.91 10 12 0.14 12 7.5 0.1 1 23 1070 1093 1070 1093 0.90 11 12 0.002 0.17 13.3 0.2 2 23 1133 1154 1132 1154 0.96 12 12 0.031 2.6 9.5 5.3 1 23 1160 1182 1160 1182 0.97
Sequence Information
- Coding Sequence
- ATGTCAATCCGTTCGACTGTCTTTCGACATATCAAAACAGAGGAGGTCATAACTCAGGCTAAAATAGAAACGGAGGAAATGGACAATATGGTCGAAAAACAGGAAGTTAGAGTCATTAGAACGACCAGTATTGATAGTGATAATCGATCTGATAAAAGCGAGGAAGAAGACTCGAGACGATCCCGCAAGAGGGCAGCTTCAACATCCCCTAGTCCTATACCCTTAGACAAACGTACAGCTAGGTTTGAATGCTCGAAATGCAGACAAAGATTTGACTCTGCCAATGCATTTGATGTCCACAGATTCACTGCTCACGGTGACGATACTAGAACAGGTTTCGACGATCTGACCTTCGTAGATTTTTCAAGCAAAAAGTTCCCTGAAATCGCCCGAGGAGTATGCGAACGGAACCCTCATATATCTATTACTGAACAGCGGTACAGATGCGATATTTGCGCCAAAGATTTCCCATGTGGGCAATCATTGGATATGCACAGAAAAACTTGTGCAAACACAACCAGAGTCCCAAGTCCCGAGCGAGACAGAAGAGAGGATTTCTTCGCTAAACTTGACTTAAGAAATCGCTCATTTGGAATTGCTGGGACATTGACGCCTCCAATGGAAAGATTTACACCTAAATTTGAAGATGGTCATCTAACAAACGGAATAAGGCATATTGATGCTGCAAGGGATTTGGCAGACATACAATCCATACTGAACGTTACATCAGCGGGAAGCCTTTTGGAAAGGCTGACCGGTACCAGAGTGGCCTTAGAAAATGCTGTGTTGACACCACCGGATACGATCGGAAAAGAAAGGGATCAGGAAGAGACGCAAGATAACTTCGCAGCTGAATTTAGACGTATGAAACTTCGTGGTGAGTTTCCATGCAGGCTGTGCCCTGCTAAATTCCCAAATCTTCGCGCTTTGAAAGGGCATAATAGAGTACATCTTAGTGGAACAGGCCCAGGACCATATCAATGTAACATGTGCCCACACGCGTCCCTGGACAAAGCAGCTCTAGTACGTCATATGCGCACACACAATGGAGACCGTCCTTACGAATGCGCTGTTTGCAATTACGCATTTACCACCAAAGCTAATTGTGAACGGCATTTACGTAACCGTCATGCTAAAGTAACTAGGGAAGATGTCAAACGCTCAATTATATATCACCCATCAGAAGACCCTAATAACGACGAAGTGAACTCAAAACTTGCTCGGGACGATGTGAAAAGGTCGTTAGCATTCCACACCCCTGAAGTTGATAGACGCAATGAAAGTTCTGGGCGGGATACGCCTCTTACTCACTTTACGCCTAGCTTCATAACTGATAGACACCCAGTCTCATCATTGGTGACAAAGAATTTACCTGAAACACCTGCATTAACGCCCAGAGAAAGCGATCAACCCTTACCTAGAATCAAAGTTAAAGGTATCGGTCAACTCACGCAAATACCTGAGTACAGACCGCCTGAAATTAATGCATTTAAGAATGCTGATATCCCGATAGACACGTACGATGAAGAAGTGCCAGTTGATCTTAGCACTAATGACGTTCTTGATCTAAGTAAAAAGAAGCGTGATGTCGATAATGATGAACCCAAAGCCCCGCCGAGGCCGTCTTTTGAACCAGACCCAGCAACAATCGCAGCATCAGCATTTGAAAAAACACGTTTACTGTTAGCTCAACAAAGACTGCTTGAAAACACACTACCAAAGATAGATCCTGCTTATTATGCCACCCAACTATCACAGCTGTATGCCGGCGCCGTACCAAGTCTCCCAGGACTTCCAATACCGCCATCCTTTCCTATAAACCCTTACTTTCTACAACCATCTTTTTTTTCTCACCCGTCAGACTCGCAGGAACTGGTCGAAATAAAACAACGTATCCAAAAACAAATAATTCAAGGCTTGAGCATGTCGGGTGGGAGGCTGGTTGCAAATGATCAAGATATACAGCCAAAACTGGAACCCGAGGAGGAAGAACCAAAGCCTTTGATACAAGCTACGTCACCTTTACCTTCTCCGCAATCTGAATCTCCCAGGCCGCTAAGTAATAGCTTAGTACCACAATCAGATTCCGTAAAGATGGTCATAAAAAACGGTATACTAATGCCCAAACAAAAGCAAAGGCGTTATAGAACTGAGAGGCCATTTTCTTGCTCTCAATGTTCAGCTCGTTTCACACTTCGCTCAAATATGGAACGTCATGTTAAACAGCAGCATCCGCAGCATTGGAGTGTTAGGAGACCAGCTTCGAGAGCTCCTCCACCATATCCTACCCCTGATACATTGGCAGATAGGGTAAAGTTTGCCCTGTTAGCTCGTCACCTCGAACGCCCTTTACAGCAAAGTGATCGATCACCTATTCGTAGAGACTCTGATGAAGTTGCTGACAATGAGGAGGATGAAGATGACACTCTTATTATTGATGAAGAACCTGAATCTGACAAACTTGATGAGCATACCGCTGCACATCGAGCTGCTGCTGAAATATTGATGGCGTCTCGTCAACAAGAACTAAACAAAGATTTCGATCTCAAAATTGCTGGAAGTTTAATTAACAAACCCAATCCTATCGTCACTGATAAGACTGAGACGGGAACAGATCCTGTCCCTGTGTCTGGTCAAGATTCTTTGCCTGTACCTATTGTGCCTTCACGTAGCGATGAAGAGGAAGATGAGGAGGGATTAGTTGCTTCAACTAGTGAAGGGAATAACTCCGGAAGCGACGAAAACAAATCTGACGTAGATACTGGAGCTCAACCGCCTAAAAAGAAGTCAGCATACAGTTTAGCACCTAACAGAGTGTCCTGTCCATACTGCCACCGGAAATTCCCGTGGTCATCGTCGCTCAGACGGCACGTTCTAACCCACACCGGTCAAAAGCCATTCAAATGTCCACACTGCCCTCTCTTATTTACAACGAAGTCTAACTGCGACCGTCATTTGCTGAGAAAGCACGGAGGATCAGCGCGAGCCATACTAGCTGAACCAATCCCTGATACAGTCTCACCACCTCAACCTGTAAATGAATCTAGAACTGTCCCAGAGAGGCCGTTTAAGTGTGCATCTTGTCCTACAAGTACTTTTTCATCTTTGGACACATTGAAGAAACATATGTCATCAAGACATGGAATGAGCGATTCACAACCAGGATCACCTAATAATATAAATGATGATTCAGCCGATGGCCTCGTCTTCAAGTGCCATCTCTGTGAGGCATCGTTTGGGGATAGGAGTGGAGCGTTGGGACATTTGGCATCAGCTCATGGTACAGAATATGACCAGTTGGTGAGCAAAGGCGCTTTGGATGCAGCCAGCGATCGAAGTGAGAGCGCCGATGATGATGAACGAGGAAAGTTTCCGGATCATGCTAACAGAAAGGTTGTCTGTGCATTCTGCGTTCGACGTTTCTGGTCAGCTGAAGATCTCCGCAGGCATATGAGGACTCATTCCGGTGAACGCCCATTCGCCTGTGACCTCTGCCGTCGAAGGTTCACGCTGAAGCATAGCATGCTACGTCATCGTAAGAAGCATAGAGAAGAGGTTACTGATGACGAGGAAGCATCACCGCCTAATACACCAATTGAATCTGACAATATAACCAATGGATATCGCTATCAAGACGATGACGGCTCAGGAAATGAAATACCTAACAACGTGAATAACAACAACTCGCCGCCAGCCGCTCCATACGATAAGAGGCTAAAACTGGACATGACTTCGCGAAAATATTCGTCAGAGACCGAAAACGATGGTGAAAATGGCAACGACCTGATTGGTAAACTTTTAGGGATCCAGGACAAGACTATCATCAACAAACTCCTCTCATCAGCAGATGAGGCTGCAAAATTCCTTGGAGTAAACAAATGA
- Protein Sequence
- MSIRSTVFRHIKTEEVITQAKIETEEMDNMVEKQEVRVIRTTSIDSDNRSDKSEEEDSRRSRKRAASTSPSPIPLDKRTARFECSKCRQRFDSANAFDVHRFTAHGDDTRTGFDDLTFVDFSSKKFPEIARGVCERNPHISITEQRYRCDICAKDFPCGQSLDMHRKTCANTTRVPSPERDRREDFFAKLDLRNRSFGIAGTLTPPMERFTPKFEDGHLTNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALENAVLTPPDTIGKERDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDDVKRSLAFHTPEVDRRNESSGRDTPLTHFTPSFITDRHPVSSLVTKNLPETPALTPRESDQPLPRIKVKGIGQLTQIPEYRPPEINAFKNADIPIDTYDEEVPVDLSTNDVLDLSKKKRDVDNDEPKAPPRPSFEPDPATIAASAFEKTRLLLAQQRLLENTLPKIDPAYYATQLSQLYAGAVPSLPGLPIPPSFPINPYFLQPSFFSHPSDSQELVEIKQRIQKQIIQGLSMSGGRLVANDQDIQPKLEPEEEEPKPLIQATSPLPSPQSESPRPLSNSLVPQSDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPASRAPPPYPTPDTLADRVKFALLARHLERPLQQSDRSPIRRDSDEVADNEEDEDDTLIIDEEPESDKLDEHTAAHRAAAEILMASRQQELNKDFDLKIAGSLINKPNPIVTDKTETGTDPVPVSGQDSLPVPIVPSRSDEEEDEEGLVASTSEGNNSGSDENKSDVDTGAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTVSPPQPVNESRTVPERPFKCASCPTSTFSSLDTLKKHMSSRHGMSDSQPGSPNNINDDSADGLVFKCHLCEASFGDRSGALGHLASAHGTEYDQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEVTDDEEASPPNTPIESDNITNGYRYQDDDGSGNEIPNNVNNNNSPPAAPYDKRLKLDMTSRKYSSETENDGENGNDLIGKLLGIQDKTIINKLLSSADEAAKFLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961349;
- 90% Identity
- -
- 80% Identity
- -