Efla007533.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990877.1:5384556-5397550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00045 0.038 15.3 1.9 1 23 266 288 266 288 0.98 2 13 0.068 5.7 8.5 3.0 1 23 296 319 296 319 0.94 3 13 0.85 72 5.0 0.4 1 23 323 346 323 346 0.89 4 13 0.00018 0.015 16.6 2.3 1 23 421 443 421 443 0.99 5 13 0.0042 0.36 12.3 2.6 2 23 452 474 451 474 0.96 6 13 3.7 3.1e+02 3.0 6.5 1 23 478 500 478 500 0.97 7 13 0.00014 0.012 16.9 3.1 1 23 505 528 505 528 0.98 8 13 3.7 3.1e+02 3.0 1.1 3 23 534 555 533 555 0.80 9 13 0.63 54 5.4 1.1 1 20 574 593 574 595 0.90 10 13 0.38 32 6.1 0.3 2 23 643 665 642 665 0.95 11 13 3.6e-06 0.00031 21.9 1.3 1 23 674 696 674 696 0.98 12 13 0.0067 0.57 11.6 1.1 3 23 704 724 702 724 0.95 13 13 6e-06 0.00051 21.2 2.6 1 23 730 753 730 753 0.98
Sequence Information
- Coding Sequence
- ATGTTGGATTTAAAAGCATGTACGGTGTGTTTTAGCACTAACGTAAAGTTATATAGTATGAAAAGTGATAATTTACGACAAAGTTACAACACTGTTTCCGGGCTTCAGACATATGATGGTGACGGCATGCCAGGATACATATGCATGGAGTGCTGTAGTCACGTCAGACGCTTCACAAAATTCAGACGCAAATGCCAAACAGCCCATTTGGCTTTACAAGAAATACTACACAAAAATAAAGAGATAAAACTATCAAACCTAGAAGCATTCAATTGTAAGGAAATTGAAATAGCTCCGATACTATCATATACAAATTTTAAAAGAATGCACTATGAAGAAGTTAAGTTTCAGTGGACGAAGCACAACCGTATTGGCCTAATCCCTGTCCATGAAGTACCAGTCATACATTACAGTACAGAGAAGACATTGGACGTATCAAACAGTATAAAAGAATACCATAATGATACTGATAATCTCATAAAAATTGAAAATGAAGGTGTTACCTATTTGGAAACAGAAAATGAAACGCAAACAGAAAATGAAGCGATGGATGATATCAACGATAGCCAAATTCAAGATAACTTTGAAGATAATTTTGAAGATAACTTTGAAAGTGACAATGAATCTAATAAGAATTTACAAGTAACATGCAAACCGGAAGATAAAAAGGTGGATGAAGATGTGGATGGTACGAATTTGGATGAGGAGTACGCAACGATATACCCGTTATCGTTGAAAGAGGCTCATGCTGTATCTGAGGTGTACAAAATGATTAATTCTGCCAATGGCAATCGGTTTACCTGTGACGTTTGTGGTAAAGGTTATTGCAATGAAAATCGACTGAAAATTCATTCAAGAATGCATGATAAGTATATAAGCGGAACATTCTACTGTGAGCTGTGTAAATATTATTACAAAACGGACTTTCTTCTAAAAACTCACATGACGGAGAAGCACATGTATAAATACGTCTGTAGGAAGTGTCCCGAAGTTAGTTATGATAGAACTTCAGCTAAACAACATTTCATATGGTCACATTTGCAAAAGGGACCGAAGAAGGATGCAAACTGGTATGAAACCAGACCAACCTGGCTTAGTTCTAAGGGTGGTAAGAGAACTAGGGGTGTCGTATCAATAAGGCCTATAAAGAAAATAACGAAATTACCAGCAGATTTCCCAAAATACACACCGATAAGCCAAGAGGACCAATATAAATTGATATTAGAGAGGCGGAATTCTAGAAATTATGTAGAGTCACAATATAAATGTGAGCTATGTTATAAAGGATTTCGAGGACTGGAAACATATAATAAACATATGAAGAAACATGATCCGGTATATTCTGGCAAGCTGCAGTGCGACATGTGCAAGTTACACTTCAGGGACGCGCGCAAGATGTACAAGCACATGAACATCACGCACCGTTTCAAATATTCATGCCAGTTCTGCAATTTCACCTGCTACAGTCGGAATCAAGCGCAAATGCATTACCGGTTCCACAAGAATATAACATACAAATGCCCGCATTGTGATAAGGAATTCAAGAAAATATCCACACGCTTGACACACATTAGAATCAAGCACCCCTCGACGAACATCTGCAACCTGTGCGGGCACAGCTACGTGAGCGAGATGGGGCTGTACTGCCACAAGCAGATCGCCCACACCAAAGAGGAGGTAGAACTGAGCTCATCAACCCTGGTGGATCCCAACCATCCGTACTACTGCACGGACTGCAACATACACTTCCTGAACGAGGCCGCGTTCACAACCCATCACGGCAGTTCTAATAAACATGCACTCACGAACCTCGCGAGCAGCTTAACCCGGGAGCAGCGCTCGCCTTCGGGCGCCCCCCGCCGCCGCGGGCGCCCCCGCCGCACGGGCCCCTCCGACATCATCAACAACGGCGTGCCCACATCCACCAGCTGCGAACTGTGCGGCAAGTATTTGGTGAACGACGTGCAAACGCGCAAGCACTACGAGACGGAGCACCCGGGGGCGGATTACCTCAAGCGGTACATGTGCGACGTGTGCGGACACACCACGAAGCAATACGCCAACCTCATGGTACACATGCGTACGCACACGAACGAGAAGCCCTACGGCTGCCCGCACTGCGACCGTCGCTTCAGCATGATGAGCAACCGGGACAGGCATCTCGTGGTACACACGGGTGAAAAAAGGTACCAGTGTCAACATTGCAATCGTCGTTTCACACAGAGCAGTGCCGTCAAACTTCACATACAAACTGTACACCTAAAAATCCCATATGCACCATGGGACAAGAAGAACAGGAAGCGACGTAAGGAACTTGAGGGTACATCAGCACCAGTTAGTGCCGTTAGTGCAGTAACAGCTGCATGCTTGCAACCGCCGCAGCACAAACTGCTCTTGGACACACAAGGAGATTATTTGAACGCTTATATTACTTATAATGATGATTGA
- Protein Sequence
- MLDLKACTVCFSTNVKLYSMKSDNLRQSYNTVSGLQTYDGDGMPGYICMECCSHVRRFTKFRRKCQTAHLALQEILHKNKEIKLSNLEAFNCKEIEIAPILSYTNFKRMHYEEVKFQWTKHNRIGLIPVHEVPVIHYSTEKTLDVSNSIKEYHNDTDNLIKIENEGVTYLETENETQTENEAMDDINDSQIQDNFEDNFEDNFESDNESNKNLQVTCKPEDKKVDEDVDGTNLDEEYATIYPLSLKEAHAVSEVYKMINSANGNRFTCDVCGKGYCNENRLKIHSRMHDKYISGTFYCELCKYYYKTDFLLKTHMTEKHMYKYVCRKCPEVSYDRTSAKQHFIWSHLQKGPKKDANWYETRPTWLSSKGGKRTRGVVSIRPIKKITKLPADFPKYTPISQEDQYKLILERRNSRNYVESQYKCELCYKGFRGLETYNKHMKKHDPVYSGKLQCDMCKLHFRDARKMYKHMNITHRFKYSCQFCNFTCYSRNQAQMHYRFHKNITYKCPHCDKEFKKISTRLTHIRIKHPSTNICNLCGHSYVSEMGLYCHKQIAHTKEEVELSSSTLVDPNHPYYCTDCNIHFLNEAAFTTHHGSSNKHALTNLASSLTREQRSPSGAPRRRGRPRRTGPSDIINNGVPTSTSCELCGKYLVNDVQTRKHYETEHPGADYLKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYGCPHCDRRFSMMSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGTSAPVSAVSAVTAACLQPPQHKLLLDTQGDYLNAYITYNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -