Efla026406.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Endotricha flammealis
Gene Symbol
-
Assembly
GCA_905163395.1
Location
LR990865.1:9612757-9618370[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0039 0.33 12.4 0.5 3 23 180 200 179 200 0.98
2 11 0.026 2.2 9.8 1.8 2 23 207 228 206 228 0.95
3 11 0.034 2.9 9.4 1.4 2 23 235 257 235 257 0.96
4 11 0.017 1.5 10.3 1.6 2 23 266 288 265 288 0.95
5 11 2.8e-05 0.0024 19.1 2.5 1 23 293 315 293 315 0.99
6 11 0.00067 0.056 14.8 0.8 1 23 328 351 328 351 0.97
7 11 0.012 1 10.9 1.3 2 21 357 376 356 377 0.94
8 11 0.0034 0.29 12.6 0.8 3 23 383 403 382 403 0.98
9 11 0.00022 0.019 16.3 0.5 1 23 409 431 409 431 0.99
10 11 0.26 22 6.7 2.7 2 23 438 459 437 459 0.96
11 11 1.4e-07 1.2e-05 26.4 1.0 1 23 465 487 465 487 0.98

Sequence Information

Coding Sequence
ATGGATGTATGCCGAGCTTGTTTAACAACTGAGAATAACATGAATTCTATTAACGATTTTTTTGTAACTAGTTACAACTTACTGACAAACCTGCATATTGCGCTATCTGATGGCATGCCACAATATTTTTGTGAAAATTGTGCTCACACCATCAAACTGTTCGTCAAATTCAGAGAGAAAGCGTTATCTGCTGATGTTATGTTACAGCAAATTTTGCAGGGCAATGGTGCAGACCACCAGCTGGTCAAAATTGAAAAGAATGAAGATGGACAACAAATAATTATAAAGAAAGAAATCAAACTTGAGATTGATGAGCCTGCCATGTCCAGCACTCTTTTTGAAGCCATTAATGATTTCTGTTCAGATAATATTGATTATAGTGAACCTGAAGAAATAAAAGTGAAAATGAGTACAAGATCTAAGAGTAGAAAGAAAACAAATGGTCATAACAAGAAGTCTAAAATGTCTACTAAAGAGAATAAGGTTAAAAAAAATACGATTAAAGATATTAAGGAGCAAGAACAAGATTCTCTTCTTTGTGGATTATGTAAACTAAAATTTGAACATGAGGATGCACTGACTGTCCATTTAGAAACACACAAGAAGGTTGGCATATGTGAATGTGGAGTATGTTATGAAACATTCATGCATTGGCCACAACTTTTTGGTCACAGGTTGTCACATTTGCCAGGAAAACAAAGGCGTTGTCATATATGTAGCAAACGTTATATGGCAGCGACATACTTGGAGGACCATTATTTAAAAACACATTATGATGGAGAGGACAAATCTCTGAAATGCAACTTTTGTATGCGTGTATATGCAACACCACGAAAACTAACTAAACACAAGCTTCGTAGTCATAGCGTGAAGTCGTTTACATGTGATTATTGCTATCGAAGCTTTAGACTGAAAACAGAGCTAATATATCATATAAGGAGACACGGTGATTTTTATGAGAACAAAGAGTCAATAAAAAATTATATGTGTGATCAGTGTGGTTATTCTTCTAATCTTCGAGCTAATCTGAGGATGCACCAATTACGTAAACACACGCCCGGCAAAGTGACATGCCCAAAATGTTTTACTATTTTCGTGAGTCAAGAGAAATTTAGTAAACATATATGCCAAGAGGTTAATCTGTTATGTCCTGTATGTGGAAAGGAATGTGCTACTAGGAAACGGTTAAGCATTCACCTAGATTCACATAGTGACGTACGCAAGTTCAAATGTAGCCGTTGCCCGGCGACGTATAAATCGCGCCAAGCACTGGCTGTACACCTGAATCGACATGACGGGAACCGCACTAAAGTATGTGAATTCTGCGCAGCGAAATTTTATTGTAAAAGTACACTTATCAAACATCGTCGTATTCATACTGGGGAAAAGCCGTACGTATGCAAAATATGTGACAAAGGATTCACTGGAAACCACAATTTGAAGGTTCACATGCAGGTCCATGGCGAATTCTTAATTGTCAGACGGGATAAAAATAAAGAAGACAATGATAAAAGTGTTCCCAAAAATATTGTAAAACGTGAATAA
Protein Sequence
MDVCRACLTTENNMNSINDFFVTSYNLLTNLHIALSDGMPQYFCENCAHTIKLFVKFREKALSADVMLQQILQGNGADHQLVKIEKNEDGQQIIIKKEIKLEIDEPAMSSTLFEAINDFCSDNIDYSEPEEIKVKMSTRSKSRKKTNGHNKKSKMSTKENKVKKNTIKDIKEQEQDSLLCGLCKLKFEHEDALTVHLETHKKVGICECGVCYETFMHWPQLFGHRLSHLPGKQRRCHICSKRYMAATYLEDHYLKTHYDGEDKSLKCNFCMRVYATPRKLTKHKLRSHSVKSFTCDYCYRSFRLKTELIYHIRRHGDFYENKESIKNYMCDQCGYSSNLRANLRMHQLRKHTPGKVTCPKCFTIFVSQEKFSKHICQEVNLLCPVCGKECATRKRLSIHLDSHSDVRKFKCSRCPATYKSRQALAVHLNRHDGNRTKVCEFCAAKFYCKSTLIKHRRIHTGEKPYVCKICDKGFTGNHNLKVHMQVHGEFLIVRRDKNKEDNDKSVPKNIVKRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-