Efla003501.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990866.1:9815607-9821445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00058 0.049 15.0 1.4 1 23 321 344 321 344 0.92 2 11 0.0041 0.34 12.3 1.8 1 19 360 378 360 382 0.90 3 11 1.8e-05 0.0015 19.7 3.1 2 23 388 409 387 409 0.97 4 11 0.012 0.99 10.9 0.8 3 23 415 436 413 436 0.95 5 11 0.35 29 6.2 0.0 1 23 439 461 439 461 0.96 6 11 0.061 5.1 8.6 0.4 2 23 549 570 548 570 0.94 7 11 0.26 22 6.6 0.2 2 23 590 612 589 612 0.95 8 11 1.2e-06 0.0001 23.4 4.1 1 23 618 640 618 640 0.98 9 11 7e-05 0.0059 17.9 2.1 2 23 646 667 645 667 0.96 10 11 0.0026 0.22 12.9 4.1 2 21 674 693 673 696 0.94 11 11 0.015 1.3 10.5 1.8 3 19 736 752 735 757 0.93
Sequence Information
- Coding Sequence
- ATGGATCAGGCCAATGTCGACAGTCGGCCAGAAATTGACTGTGGCCTTATATATCCCATTCTCATCATACCAAAGAATTGCACAACGCTGGTTACCAATCGGGAGGCTACTGATAACGTATTTATTGACGTGCACATTACATCTCCAGACGTCGAAGGCAACGAAATGTGTATTTACACTGGTTATTGTAATGTGAAATTGACTGGCACTCACGATATCCCAGTACACATACAATCCCCATCTGCTAATGCATCTTTAAGTTATGTTGAGAGTGTGGAGACAGTTGATAGTGAGCAGTGTGCCGTAGTTAACAATGAGGCTGTCCCTCAAGCAAGTTTCACACCTTTCAAGCAGTCTCAAGTATGGATCGACCCAGCAAGGAGTCCTTTTGTGTATAATCAGTATGATGAAACAGAAACTCAGGAATACTCAATATCCCACCAAACGCGTACAAGTCGTATAACAGTTGAGAAACGTAATACATATATAACACAGAATGTATATAATATTAAGGAAGCAATCCAATATTCTCCCAGTGAAGATTTTGAGCATAAGAAATTTAGAAAAATACCGGTGAGTGAGGTGCAGCAAAATGAACCAAATAACTTACATTTTTATGAAGAGGATGAGTATGAATGTGGTGTATTTCTGTCTCAGCTCTCCGAGGAGATAATGAATGAGAAAGAAAAAAAGGCTAGAGAGGAACGTAAGTATATAGGAATGCCGAGGGAGAATGGTGCACTAAAGCAACTCATGTCCTCTGATATTCAGTGCGCTACGAAGCCAAGGAAAACAATATTGTTCCTTGGTCATGACTCTCATAGCGGTCAGACCATACAGAAGATTGCGGTCAATGATCCAGCATTGGAATGCTCTACTATGAGTACTGAAAGTTTTGTAATAGAAGAGCAGAAAGTTGACATTGGTGAAACCGAATATGTGAATCCTCATGCAAAGAAATACCAATGCGACAAGTGTAAACAAATATTTGATCAAATCTCCAAATTTAAGAAACATATGGTTGGCAACCATAAGATGAGGTACGACATAGACCCAAATCTGGTCAGAGAAGTCAAATTCATGTGCACAGAATGTGGGAAGAGTTTGAAGACCCAAGAGAAGTTCGAAATCCACTGTATGGGCCATGGCGACCCAGAACTAGAATGTAACAAGTGCCATAAAGTATTCGCATCAAAATTCACTTTGCGCACACACCTTAAAATACATACTAGAAAATATGGCTGTAAACATTGCACAAGGTCTTATTCCGAATTGGAAGATTTGGTATCACACACTGCCAAAGTGCATTATATGTATATGTGCGAGTTGTGTGATTTCGAGACTAGTGAAGGTGCTGAGTTGATAACGCACCTGGAGAACCACGAACACGGTTATAAGGAGTTGGAAGAGTCAGATTGTCCTTCCTCTATTTCTGAGACTGATATTATAATAACGGCCCCTGAGAATCAGGAGGAATGGGAAGTGAAGAATGACACAGATGACTCCCAGTCTATGCTAGTGTCCAAAGCAGACGAAATCATAAAAGCAGACGAAATCATAAAAGCAGACTCAGTCTTAGCTAAGGTGATGGCCAATGAAGTATTTTTCTTACATACAAAGCGTAAGAATAAAAGATACAATAAGACTTGCGACGCCTGCATGAAGAAATTCGACAGGATTGGCGACCTGAAAAGGCACCTCATAGAGCATGTAATAAGAAGCACATTAGCCAAGACGCCGGTCAACAAGTTTGGCACTCTCAACATACAATGTGAGGTATGCCAAATGGTAACATTTTCTAGAGTGGACAGGTATAAGGCCCATTTACGCGAACACGCAAAACTAACCCTCTACAAATGCACGTTTTGCGACAAATCATTCAGCGATTCTAGTAACTTTTCCAAGCACAAAAAAATCCATGGCAACACATACTTACAATGCGATTTGTGCCAAAGGAAATTCAACACTAAAAAGATGCTCACACAGCACATGGAGTACCACAACAAAAACTCACCAATCACATGCGATTACTGTAATAAAGTATTTCATTTCGAATCAATGCTCAATAAACATATTAAATGTACTCACAGTAAAGAGTTAATGACTAAATTTAAGTGTAGATTTTGTAGTAATTATTTCAAAACACTAAAGGAAAAATGGGATCACGAATGGACTGTCCATAATGTGAGGAAAATGATAGTTGATTGTCTAATCTGCGGCACAAAGTTCAGGAAATATGCTGAACTAAAACGACATTGTATTGAAAAACACGACATAGAAGTACCGCCCGCTAAAGAGTTGTTAAAAAACAAGAAATGTAAATATTAG
- Protein Sequence
- MDQANVDSRPEIDCGLIYPILIIPKNCTTLVTNREATDNVFIDVHITSPDVEGNEMCIYTGYCNVKLTGTHDIPVHIQSPSANASLSYVESVETVDSEQCAVVNNEAVPQASFTPFKQSQVWIDPARSPFVYNQYDETETQEYSISHQTRTSRITVEKRNTYITQNVYNIKEAIQYSPSEDFEHKKFRKIPVSEVQQNEPNNLHFYEEDEYECGVFLSQLSEEIMNEKEKKAREERKYIGMPRENGALKQLMSSDIQCATKPRKTILFLGHDSHSGQTIQKIAVNDPALECSTMSTESFVIEEQKVDIGETEYVNPHAKKYQCDKCKQIFDQISKFKKHMVGNHKMRYDIDPNLVREVKFMCTECGKSLKTQEKFEIHCMGHGDPELECNKCHKVFASKFTLRTHLKIHTRKYGCKHCTRSYSELEDLVSHTAKVHYMYMCELCDFETSEGAELITHLENHEHGYKELEESDCPSSISETDIIITAPENQEEWEVKNDTDDSQSMLVSKADEIIKADEIIKADSVLAKVMANEVFFLHTKRKNKRYNKTCDACMKKFDRIGDLKRHLIEHVIRSTLAKTPVNKFGTLNIQCEVCQMVTFSRVDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGNTYLQCDLCQRKFNTKKMLTQHMEYHNKNSPITCDYCNKVFHFESMLNKHIKCTHSKELMTKFKCRFCSNYFKTLKEKWDHEWTVHNVRKMIVDCLICGTKFRKYAELKRHCIEKHDIEVPPAKELLKNKKCKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -