Efla016856.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990879.1:4306787-4315963[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.036 3 9.3 4.1 1 23 222 245 222 245 0.92 2 11 0.058 4.9 8.7 0.6 2 22 254 274 253 278 0.91 3 11 0.0007 0.059 14.7 0.2 1 23 279 302 279 302 0.97 4 11 0.096 8.1 8.0 2.3 1 23 306 329 306 329 0.96 5 11 4.3e-06 0.00037 21.7 1.5 3 23 334 354 332 355 0.94 6 11 0.0097 0.82 11.1 4.5 2 23 359 381 359 381 0.96 7 11 0.0048 0.4 12.1 0.3 3 22 396 415 395 419 0.92 8 11 0.0011 0.096 14.1 0.5 2 23 428 450 427 450 0.94 9 11 0.017 1.5 10.3 6.3 1 21 456 476 456 479 0.93 10 11 0.00011 0.0093 17.3 0.6 2 23 489 510 488 510 0.97 11 11 0.0021 0.18 13.2 0.5 1 23 516 539 516 539 0.97
Sequence Information
- Coding Sequence
- ATGTTTGCTATCAAGGAAGAATTCGAAAAAAATGTTTGTAGGGGTTGTTTAAGTACTAATAGGAACCCAGTAATATTGAAGAGCCATGTCGATCTGTTTTTTAATTTGTTGGGCGATCAACAGCAATTTTGTGAGACAAAAATACTTTTATGTTGGGAATGCAAAGCTTTATTAAAAAGAATACAGTTATTTCAGAACAGAATCCAACAAGCGCAGTTTATCTTGCAACAGTCACTATATACCTTAGAAAATTTGCAAATAAGCAATCTTTCAACGTTGACAACAACAAAAAAGGATTATTACGATAATACCATAGAGTATGAAGAAGTTAAAATAGATGAGAACGTAACAATAGATGAGACAAAAGAAATCATAGACAATTTTATAAAACAAGAAACGGACCTAGACAACGACGATATATATGACGACTTTAAATTAGAGAACGTTGATGAGGAGAGTGTTGCCAGTTACGAGAAAAACTACCAAGATGGTAGTAAAGAACGAAGGCATTCTATAAAGAAGTATGTGAATAAAGCTGTTGTTATAGATACCGGTGTTATGAGCGATCCTAAGAAATATTGTAGTAAAGTATATTTAAGTGAGAGAGAGATAGAAGATGAGTACGAAAAGGACATGAATAGTATTGGTTTCGAGAATCTACCGTACAAATGCCAGGAGTGTAAGAAGGGTTACAAGAAAGAGCTGTATTACAAGAGGCATTATACTTTTGAACATGTGGATCGTACAAAAAAACGTTTGAATTGTGTTATGTGTAAAGGGACTTTTCCAAATTTCGATGCGTTGAAACAGCACTGGCGTAGGTATACCAAGCACTATGCATGTACGTTATGCGGATGGTCGGCGAGAGCGAATTACACTCTGATGACACATATAAGACGTACGCACGCCTGTTTGTATAATTGTAAACGGTGCGAGGGACAGTTCAGAACACTCCGTGAATTCAGTAATCATTATAAGAACATTCATGAGAGGATAATTTGCGATAATTGTGGAAAAAGTTTTGTTAAGAAGAGGACGCTTGAAATTCATATCAAGCGTCATCATGCCCCAGCTACATGCTATATATGCAAAAAGACATACTCACACTACCACGTATTAGAGAACCATTATAGGTTAAACCATCCTCAATTTTTGAAAGGTGACACAAGAACTGAGTTAGCTTATTGTGTGGAATGTGACAAACAGTTTCCGAGTATTTATAAGTATAAGAGACATTTGATGAGTGCAGCTAAACATAGACCTCCTAAGAGAGTTAGTATACCATGCCCCGAGTGTGGTAAACTGTTCGCTCGCAAAGTGCGCATGACGAACCATTACCACTCTGTGCATGTGAACGACTCAAAACATCGGTGCGATATATGTAACAAGTCATTCTGCTCGGCGTATTCAGCTAGAACCCATAGACAATGTGTCCACGAGAAGATACCTCTGCCAAAGAACAAGATGTGTGATATTTGTGGCCGGGGATTTAGCACGAATCGGATTTTGATAAATCACCGTAGAACACACACGGGGGAGCGGCCTTATGCGTGTGCGCACTGCCCGGCGACGTTTGCGCAGCTCACTGCTATGAAGACACACGAAAAGACGCAACATAAGACCACAACGCATATGTAA
- Protein Sequence
- MFAIKEEFEKNVCRGCLSTNRNPVILKSHVDLFFNLLGDQQQFCETKILLCWECKALLKRIQLFQNRIQQAQFILQQSLYTLENLQISNLSTLTTTKKDYYDNTIEYEEVKIDENVTIDETKEIIDNFIKQETDLDNDDIYDDFKLENVDEESVASYEKNYQDGSKERRHSIKKYVNKAVVIDTGVMSDPKKYCSKVYLSEREIEDEYEKDMNSIGFENLPYKCQECKKGYKKELYYKRHYTFEHVDRTKKRLNCVMCKGTFPNFDALKQHWRRYTKHYACTLCGWSARANYTLMTHIRRTHACLYNCKRCEGQFRTLREFSNHYKNIHERIICDNCGKSFVKKRTLEIHIKRHHAPATCYICKKTYSHYHVLENHYRLNHPQFLKGDTRTELAYCVECDKQFPSIYKYKRHLMSAAKHRPPKRVSIPCPECGKLFARKVRMTNHYHSVHVNDSKHRCDICNKSFCSAYSARTHRQCVHEKIPLPKNKMCDICGRGFSTNRILINHRRTHTGERPYACAHCPATFAQLTAMKTHEKTQHKTTTHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -