Efla013527.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- zfpm1
- Assembly
- GCA_905163395.1
- Location
- LR990860.1:1755543-1761672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.4 3.7e+02 2.8 0.4 2 23 5 26 4 26 0.94 2 12 1.4e-05 0.0012 20.1 2.3 2 23 1112 1133 1111 1133 0.97 3 12 0.00016 0.013 16.8 2.5 1 23 1139 1161 1139 1161 0.98 4 12 0.0061 0.52 11.8 2.3 1 23 1167 1189 1167 1190 0.96 5 12 0.41 34 6.0 0.0 6 23 1204 1221 1203 1221 0.98 6 12 0.022 1.9 10.0 1.1 3 23 1228 1249 1227 1249 0.96 7 12 0.015 1.3 10.5 0.1 2 23 1266 1286 1265 1286 0.97 8 12 0.0011 0.095 14.1 0.5 1 20 1292 1311 1292 1314 0.90 9 12 0.013 1.1 10.7 1.5 1 23 1322 1344 1322 1344 0.98 10 12 0.0064 0.54 11.7 7.2 1 23 1350 1372 1350 1372 0.98 11 12 3.2e-06 0.00027 22.1 1.3 1 23 1378 1402 1378 1402 0.98 12 12 0.0012 0.099 14.0 5.1 1 23 1408 1430 1408 1431 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGTTGCAGTGCCCCGTATGCACGCTCTACTTGCACAATGGGATGACGCTGGAGTCCCATTTAGATACACATCCTAAAGACCAGGTTATTAAAGCTCTGTGCAGTCTTACGGGTAAGGGTGGCAGCTACTGTAGTAGAACACCTACACCATCGCAATCAGAGAGATCCTACAGAAGTAGGTCAAGGACTCCAGCTGCAGATGACAGGTGGAATGGATCTCTTCGTAATTCAGAAACTGATAGGTACTGGCGTAGAACACCCAGTAGAACATCAAAGTCCAATTCGATACTCAGTACATCCCGAAATGCCACTCCGGACATTAGAATGAGTGATCTCAATTTTGAAAATAATTCAATAACCACTTCCAATTCACACACTCCTTTTATAATGAAGTCAGATAAAGTGCAACAGTCTTATCCAAACATGTCAGTACCTGATTTTGATCAACCGTATGTGTACTATCATGACCAGCAGGAAGATAGAGAAATAAAGTATTCTCGGACTGCAGAGTACAATGCACTGAGTAATAACAGTGTTTTTGCATATAATATACCACCCACAGGCACTTGTGGTAAGCTGCATACCACATTGATACCATCTGTAAGTAATAGGGCGAATGACCTTGTCAAAATACTGCCAAAACCGAATAATATACTTGTGAAAACAAATGTAAGTGGTTTGCAGTATATAACTCCTGGAGTAAAGCCTATGCATGTAGTGGTTCCAACCTCCAGAGCCTTTCTACATAAGAACATGCAGAATAATGTAATGATGACCAACACTATGGCCACTGGACAGATGTTGGAGCCTAAGACGGTGAGTGCTCTCCCTAGCAGTCAGTTCAACCAAATGTCAACGGGCTCCCTGACTCCAAGCACCACGGTGGTCACTCAAAATTCACAAATAATTTATAGGGAACTGGTTCACAATTTAGATGGTAAACCTTTTATGTCAAATGTACCTGCTGTTCTAAGTAGCCATGAAAATATAGCCAATGTAGCACAAGCAAGCTCTTTGTATCAAAATGTGATGGTTGTTGATCAATTTGGTAATACCTCATGTATGTATACAGCACCTCAGCAGATTTTGCCCAAGAACTGTAACACTCCCATTACAACCCATCTAACTCCTGTTCATGTGGAGAAACCGATCACTAGTGATGCAAATAAAACTCTTATTATAGAGGTAGGACCTATGGTACCATCTGTGCCAACAATTTCAAACACTATAACGCAAACACCACCAAGCATTAGTAGTCCTAAAAACCTATCTAGTGATACTAATAAAAAAAATAAAAATGAACGTAAAGCTGATACTCCTGGATCTAGCAAAGGCCTTAAAATTCTCAGCAACATTAAAGTGGAAGTACCTGTACAGCATCATAAAAATATGATCAACACTGTGATGGATTTGACAGGATCCATTGATCCAGAGTGCCCTGATCGGCCCCAAACTCCTGAAACAATTATACCTGATTTAGGTGATAACAACAGCAATGCAGCTGATGATTCTGCAGAGCCTACAGCAGCAACCACTACAGATGGTTCACATTCATTTTCTGTGATAAAAAATGTTGGAAATCCTCCGTCTTATAAAGAATCTATAGCAAAGTTAAATGTGGTGGAAACCAAGATGGACACTGAGTTTTCAGATAGCTGTCCAGTACCTGACCTCATTTGCAATGAGAAGCCCTCAGTATCTCCTTGTAGTGAGCTGTCTGAGCAGGGAGACAATTCGACCGATTGCTCTCCACTGTCACCGAAACTCCGCAGTGGCCCTAGTTGCAGCAGTAGTAGCTCAAATACCAATGTCAGTAAACAAACACAACCTTCCCATAAGTTATACAGAAATAACACCTTAAGACTGAATAACATTTATGTAAAGAAGCATAAGAAAGTTCTACAAATAAAAAATTCCAAAGCATTTTCCATGAGTAGCGCGCCGTTGACACAGTGCAAACTGGAACCAAAAGCGTCTTCATCCAAGAGCAGGTCTCCTGAGCATTATTCAATGAATAAAATACATCGCTGTGATACTCCCGAAACTAGAGAAAAATGTCTTTTAGAGACAGTATCTGTAGAACAAATTACAGGTTGTAATAACCAGAATGATCATGATTTTGACGCCGATACTGAGGAGCAGTCTATGGACTTGGAACCCGTAGCGCCGTCCAGCCTTGAGCACAGCGGTCGGTTTACGACAAGTGTGGATGTGGTGCAAGTAAAGGAAGAAGATTTGTTAAGTAATGAGACAAGAACCAGCACGCCACATCGAGTTCTAACGCCGCTGGAGACGTTACGGCCTATCAATGTGATCTCGTATTCACACATGCCCACTGCAGACTTCGACGAAGAGTCAAACCACAGGGAGCTACTAGATCTCGAGGCCAATTCTAAAAACAAACAGTTTGTTAACATGATGAATGAAAATTATTTTGGTGATAATATCTATGCTGATTACTTCACTCCCGATAGAGTAGAGGCATTTGATGCAGAAAGAGAATCGTCGTTTGCTAAAGAGGGACACAAAGATTACATTTGGGGCGAGTCATCACAGAAAGTGAGTGAGTTTGTCTTGCCGAATTTTATTCATGAGAGTTACAAGATAGCAGAAAGTAGCGGTGTGGATTACACAGAATTACACAGTAGGGGAAAGGAAGGGAACGGTGAAGATGGATGCGAGCAGGACAGTAAGGCCGACGTGCTGAGCGAGAGTCAAAGTTCGGCCGAGCCGCTCAACATCCGCGCCGACGAGCGCATGCCGCCGCGCGGGGAGATCAGCGGCGAGAGCAATGGAGACATGGAGTCGCCGTGGACAGGGATGTACACTGAAGTGACACCTACTGAGCCATATGACCTGCTAGCACGCGAGAGCTGGGTTTCTGATGGGTCAGATGTGGACTCCAACGAGAAGAGGGACAGTCTATTGCAAATACAACTCCATAAAGCGTTAGTCCAACAGCGCCCTTTTTGTTGCAGTACTGAGCAAGCGCGGACGGCGCGGGGGCCTCGCGGCGCACCCAAGTTCCCGAAGGACAACTGCACAAACACCACATACCGTCGCATGCTCACCGCTAGGATTATCAAGAAGGAGGAGAAAACTGAAGATACACTTACTGATGGGAATGTAACACTTCTTGATTCAAAGAAAGCAATCACGACCACAATACTCCAAGTTTATGATGTGATGAACGAGACCAAGCCGAAGATCGAGGGGCTGATAAAGCAGGAGAGCAAGAGAAGGCGGCGCGACTACACGTGCCCCACCTGCAAGGTGGACCAGCTCTCCGACGTGGCCTTCCACGCCCACCTCAAGATTCACCCCCTCGAGTGCCTCACCTGCGGGAAGTGCTTCTTCCGCCGGGCCAACCTCGTGCTGCACATGAAGACGCATTTAGGAATCAAAAATTACAAGTGCGAGGTGTGCGAGAAGCGATTCGTGACGCGCCAGAAGCTGATGGAGCACCACAACGTGCACACGGGCCGCGCGCCGTTCAAGTGCACCGAGTGCGCGGCGGCGTTCCGGCGCTTCTCCAACATGGTGCAGCACCGCGACCGGCACCACCGGCGCAAGCGCGCGCGCCCGCGCGACTTCGTGTGCGCGTGCGGCGCCGTCTTCGCGTCGCGCGCCAAGCTCGCCTGGCACGCGGAGACGCACGAGCCGCGCCCGAAGGCCTGCCTCTACTGCAGTGACAAGTTCGTGCACGCCGCCTCGCTCACGCGCCACGTGCGCCGCTCGCACAACGAGTACTACCTCTCGGAGCGGCTCAAGGGCAAGGTGGACAACGTGCCGTGCCCCGTGTGCAAGCAGGTGTACTTGCGCACCAACCTGCGCGCGCACCTGCTCACGCACAGCGGCAAGCGGCCGTACGTGTGCATCATCTGCAACAAGGCCTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACATGAGCCGCTCCGCGAAGCCGTTCAAGTGCACGCTGTGCAAGGGCGCGTTCATCCGGCACACGGAGTACGTGTCGCACATGAACGCGCACAAGTCGGTCAAGCCGTACACGTGCAACTACTGCGGCTGTCAGTTCATTAGGAAGTACAATTGCCAGCGGCACGTGCGCGAACACGAGATGGCCAAGAAGTACGTGTGCAAAGTGCCCGAGTGCGGTAAGTCTTTCCACCGTAGTTATTACCTGTCCGAGCACATGAGGGTGCACAGCGGCGCGCGCCCGTTCTCGTGCAACATCTGCGGGAAGACGTCGAGTAATAAGTCCAACCACAACAAGCACGTGAAGATCCATCACGCGCGCGAGCCCGTCGCCACGGAGGCGTAG
- Protein Sequence
- MDQLQCPVCTLYLHNGMTLESHLDTHPKDQVIKALCSLTGKGGSYCSRTPTPSQSERSYRSRSRTPAADDRWNGSLRNSETDRYWRRTPSRTSKSNSILSTSRNATPDIRMSDLNFENNSITTSNSHTPFIMKSDKVQQSYPNMSVPDFDQPYVYYHDQQEDREIKYSRTAEYNALSNNSVFAYNIPPTGTCGKLHTTLIPSVSNRANDLVKILPKPNNILVKTNVSGLQYITPGVKPMHVVVPTSRAFLHKNMQNNVMMTNTMATGQMLEPKTVSALPSSQFNQMSTGSLTPSTTVVTQNSQIIYRELVHNLDGKPFMSNVPAVLSSHENIANVAQASSLYQNVMVVDQFGNTSCMYTAPQQILPKNCNTPITTHLTPVHVEKPITSDANKTLIIEVGPMVPSVPTISNTITQTPPSISSPKNLSSDTNKKNKNERKADTPGSSKGLKILSNIKVEVPVQHHKNMINTVMDLTGSIDPECPDRPQTPETIIPDLGDNNSNAADDSAEPTAATTTDGSHSFSVIKNVGNPPSYKESIAKLNVVETKMDTEFSDSCPVPDLICNEKPSVSPCSELSEQGDNSTDCSPLSPKLRSGPSCSSSSSNTNVSKQTQPSHKLYRNNTLRLNNIYVKKHKKVLQIKNSKAFSMSSAPLTQCKLEPKASSSKSRSPEHYSMNKIHRCDTPETREKCLLETVSVEQITGCNNQNDHDFDADTEEQSMDLEPVAPSSLEHSGRFTTSVDVVQVKEEDLLSNETRTSTPHRVLTPLETLRPINVISYSHMPTADFDEESNHRELLDLEANSKNKQFVNMMNENYFGDNIYADYFTPDRVEAFDAERESSFAKEGHKDYIWGESSQKVSEFVLPNFIHESYKIAESSGVDYTELHSRGKEGNGEDGCEQDSKADVLSESQSSAEPLNIRADERMPPRGEISGESNGDMESPWTGMYTEVTPTEPYDLLARESWVSDGSDVDSNEKRDSLLQIQLHKALVQQRPFCCSTEQARTARGPRGAPKFPKDNCTNTTYRRMLTARIIKKEEKTEDTLTDGNVTLLDSKKAITTTILQVYDVMNETKPKIEGLIKQESKRRRRDYTCPTCKVDQLSDVAFHAHLKIHPLECLTCGKCFFRRANLVLHMKTHLGIKNYKCEVCEKRFVTRQKLMEHHNVHTGRAPFKCTECAAAFRRFSNMVQHRDRHHRRKRARPRDFVCACGAVFASRAKLAWHAETHEPRPKACLYCSDKFVHAASLTRHVRRSHNEYYLSERLKGKVDNVPCPVCKQVYLRTNLRAHLLTHSGKRPYVCIICNKAFTTKWNLKLHRWTHMSRSAKPFKCTLCKGAFIRHTEYVSHMNAHKSVKPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMRVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -