Efla006580.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990881.1:3822328-3826377[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0022 0.19 13.1 1.1 1 23 68 91 68 91 0.97 2 19 3.2 2.7e+02 3.2 0.1 2 23 118 140 117 140 0.91 3 19 0.0098 0.83 11.1 0.4 2 23 163 184 162 184 0.97 4 19 0.36 30 6.2 1.2 1 23 188 210 188 210 0.95 5 19 0.17 14 7.2 1.8 1 23 214 237 214 237 0.92 6 19 2.5 2.1e+02 3.6 0.3 1 22 244 264 244 266 0.72 7 19 0.18 15 7.1 0.8 2 23 274 296 273 296 0.94 8 19 0.00039 0.033 15.5 0.0 1 23 302 324 302 324 0.95 9 19 0.00098 0.083 14.3 0.1 1 21 356 376 356 377 0.95 10 19 0.42 36 6.0 0.1 1 23 454 477 454 477 0.90 11 19 0.15 13 7.4 0.1 2 23 504 526 503 526 0.94 12 19 0.087 7.4 8.1 1.3 2 23 549 570 548 570 0.97 13 19 0.0051 0.43 12.0 0.2 1 23 574 596 574 596 0.95 14 19 0.23 19 6.8 0.4 1 23 601 624 601 624 0.93 15 19 0.026 2.2 9.8 1.3 1 21 631 651 631 654 0.85 16 19 0.049 4.1 8.9 2.9 1 23 661 684 661 684 0.97 17 19 0.018 1.5 10.3 6.0 1 23 690 712 690 712 0.97 18 19 4.5e-06 0.00038 21.6 1.1 1 23 718 740 718 740 0.99 19 19 0.00097 0.082 14.3 5.2 1 23 746 769 746 769 0.97
Sequence Information
- Coding Sequence
- ATGGGTAACCCAGATCATTCCGTAAATAATGACGTAGATGAAGACGACGACGCGCATATACTAGTGGTAAAAGATAACGAGAATGACAAAGAAACTAAATCTGAGAAAGATTATACAGAGTTAGATAAACATTTTTACAATATAACAGAAATACTTAAAAATTCTAACGCAACTCCATTTAAACGATGGGTAGGGCATAAATACACTTGCTGTTGGTGTGCACAACAGTTTAATGATCCGGATGATTTGAAAGTTCATACTCTAAGAACACACGAAGACGCATCCAAAGCTTGTTTCATGAAAGCCAGAAGCGTTTACGAGTACGCAGTCAAACTAGACATCACCCTTCTTTACTGCACATTATGTGCTAAGAATATAAACAATATTGAGGATCTTAAATATCACTTTATTGTAGACCACGAAATTGAAATGTTTATTGACATCAATAACCAAATTATACCTTTTAATTTTGAGTCTGAATACCTTAAATGTTTCGTTTGTTCTGAAGAATTTGATGAATTCAACAATCTATTAGAACATATGACTACACATTACAGTAATTATTTATGCGAGTCTTGTTCAATGGGTTGTATTAATTTAAAACAGTTGATCGATCATAGTAAAACACACGTTGCTCCGTTCAATTGTAGCTACTGTACAGAGGCCTTTGATTCTAACGATAAAAAAGAAGATCATGAACACAAAATCCATGGGACGCCTAGAAGCAATTATGAATGTGAATATTGCAATGAAACTATCGATTGGGAACGTAAAACGGAGCATCTAAGTAAAGTACATGCGATTAGGTCTCTGCCAATTGTTTGTCGTTTCTGCAAAAGCACGTTTGACACACGCGCTATGTATAGCTCTCATCTCAAACAGGCACATCTGAAGCTTAAAGAATATGCTTGTGATTTGTGCAATTTGAAGTTTCCAACGCCGAGTTTGCTAAAGGATCATGTAGAGGCTCATAACAAGAGTCCTGAACCTGAAAATGTTCAGATCAAAAGTCCTGATGTTATTAAGCCGCCCAAAATGTATGAGGACGATGAAGCGAATTATCGTTTCAAATGTGGCGAATGTGGTCAGATATTCCTTCGCCAAAATAATTTGATCATACATATGACTAAGTTATGCGGTAGTCGACGTCAGGCTATCAACAAACGTAATATCCATGGCACAGCGGCGCGGAAAAAATGTGATAATGAAGAGGGAGGGAGAGATAAAACGAAACAAACAAGGATCAAGAATGAAACTAGGCTCGCTATGGCAAATGAATTAACAAAACATTACATTAACATTAAAGAAATACTAAAGAATTCTAATGCTACACCAATAAGATGTAGAGGTGGCGTTGGTTATGCCTGTGGCTATTGTACTGATCAGTACCCTGATCCTGCTGACTTGAAAACACATTCCCTAGAATCTCATAAAGACTTAAAAAATGCATGCTTCATGCAGAGAAATAGACTGTTCGAATACTTAGTTAGGATCGATATTACTAATCTTAAATGTAAATTGTGTGACAGCAGTATCGATACTCTTGAAAATTTTATTATTCACCTAAAAGATATACATAAGAGAAAAATGTACGTTGACATTAAAAATCATATATTACCTTTCAAATTCGAGACTGAGGCGCTACAGTGTTTTATGTGTTTAAATGTCTTCAATAAATTCAAAACTTTACTCGAACACATGAACTCGCATTATAGGAATTATATCTGCGAAACATGCGACGCTGGCTTTGTTAATCTTAGACAATTGTCAAACCACAAAGTCTCGCATATAACAGGCACATTCCCTTGTGGATTTTGCCCTAAAATATTTGACTCTTTTATCAAGAAACAAGCTCATGAAAAATCTATGCATATTTATAAGAACATTCTACATAAATGCGGATATTGTAATGAGCGGTTTACGCGGCCTAAATTTAAGGATGAGCACATGGTTGCAGTTCACGGTGTACAAATATTACCACATAAATGTCAGGCTTGTGAGAAAGAGTTCGATTCTGTAAAGAATTTGTATTACCATACAAAAAGAGATCATTTGATGGAAAGGTTCCATAAGTGTACGGAATGCGAGAAATCTTTCTTCACTCTCACACAACTGAGATGTCATATACTCTCTCATACTGGAGTTAAGGAGTATCAGTGTGAAGTTTGTCTAAAATCCTATGGAAGAAAGTATACATTGAAGGAGCACATGCGGATCCACGCGGATGACAGACGATTTAAATGTCAGCATTGTGAACAGGCTTTTGTGCAAAAGTGCAGTTGGAAAAGCCATATGCGAGCCAAACACGGGGAGATAATATGA
- Protein Sequence
- MGNPDHSVNNDVDEDDDAHILVVKDNENDKETKSEKDYTELDKHFYNITEILKNSNATPFKRWVGHKYTCCWCAQQFNDPDDLKVHTLRTHEDASKACFMKARSVYEYAVKLDITLLYCTLCAKNINNIEDLKYHFIVDHEIEMFIDINNQIIPFNFESEYLKCFVCSEEFDEFNNLLEHMTTHYSNYLCESCSMGCINLKQLIDHSKTHVAPFNCSYCTEAFDSNDKKEDHEHKIHGTPRSNYECEYCNETIDWERKTEHLSKVHAIRSLPIVCRFCKSTFDTRAMYSSHLKQAHLKLKEYACDLCNLKFPTPSLLKDHVEAHNKSPEPENVQIKSPDVIKPPKMYEDDEANYRFKCGECGQIFLRQNNLIIHMTKLCGSRRQAINKRNIHGTAARKKCDNEEGGRDKTKQTRIKNETRLAMANELTKHYINIKEILKNSNATPIRCRGGVGYACGYCTDQYPDPADLKTHSLESHKDLKNACFMQRNRLFEYLVRIDITNLKCKLCDSSIDTLENFIIHLKDIHKRKMYVDIKNHILPFKFETEALQCFMCLNVFNKFKTLLEHMNSHYRNYICETCDAGFVNLRQLSNHKVSHITGTFPCGFCPKIFDSFIKKQAHEKSMHIYKNILHKCGYCNERFTRPKFKDEHMVAVHGVQILPHKCQACEKEFDSVKNLYYHTKRDHLMERFHKCTECEKSFFTLTQLRCHILSHTGVKEYQCEVCLKSYGRKYTLKEHMRIHADDRRFKCQHCEQAFVQKCSWKSHMRAKHGEII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -