Efla001577.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Endotricha flammealis
Gene Symbol
-
Assembly
GCA_905163395.1
Location
LR990880.1:8571373-8573931[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00012 0.0099 17.2 1.6 2 23 205 226 204 226 0.97
2 16 4.7 4e+02 2.7 1.8 1 23 256 279 256 279 0.93
3 16 0.0035 0.29 12.5 0.1 2 23 334 356 333 356 0.96
4 16 0.0002 0.017 16.4 3.8 1 23 362 385 362 385 0.97
5 16 0.00085 0.072 14.5 0.0 2 21 390 409 389 410 0.93
6 16 0.098 8.3 8.0 2.4 1 23 418 441 418 441 0.96
7 16 0.0093 0.79 11.2 2.1 1 23 445 468 445 468 0.96
8 16 6.4e-05 0.0054 18.0 0.6 2 23 481 502 480 502 0.97
9 16 0.0094 0.79 11.2 2.2 1 23 508 530 508 530 0.98
10 16 0.01 0.87 11.0 0.4 2 23 566 587 566 587 0.96
11 16 1.8 1.6e+02 4.0 0.0 3 23 593 612 592 612 0.88
12 16 0.0076 0.64 11.5 1.5 2 23 629 651 628 651 0.97
13 16 7.1e-05 0.006 17.9 3.0 1 23 657 679 657 679 0.99
14 16 0.0012 0.1 14.0 5.3 2 23 686 707 685 707 0.95
15 16 0.0017 0.15 13.5 0.6 1 23 713 736 713 736 0.89
16 16 0.05 4.2 8.9 0.1 2 23 742 764 741 764 0.95

Sequence Information

Coding Sequence
ATGGATGATTATTCAACAGAGATAGATTCAAGCGATAGTTTAATAAAAAATATGTTAATGAATGTATGTAAAGCGGCGAAATTCTGTTGTATATGCTGTGAATGCGAAAGTACACTGTGGGACTTGTCTTCTGAATTCTGCATCATTATAAATGGAGAAATACATAAGAAGCTGCTGATTGATATTGTGTCTTATGTCTTTGGTGATGAGTGGCAAGAAATTCTATCCAGCGAGCACATTTGCGACGTATGTACGCAAAAGACATTACAATCATATGTTTTCATATATAATACAAAAGAATTATCCAAGATATTAAATGAATACATAGAAAACTTGACTTCAAAAGTGAATGATGTTAATAATCAGCTAACTGGTGTTGAATATGAAAATTCTAAGGTTTGTATAGTTTTAGCAAAACCTAAAGAAATAGCAAATTATATAAAAAATTTAGAAACTAAAGTTAACCCAGAAAGGAATGAAATAAACAAACCAGACGGAACACAGAAAAGAGATAGAAAAATTGATGTAGACAATTTTAAACGCGTAATAAAATTGATTAAAAAATCACCAAAGAAGAACAAATATTTAACAAAATACGGCAAACGTGAAATACAGTGTAAAATTTGTAATGAAACATTCAAAACACAACGTTTAATACAATCACATTATAAATCACACGAAATGGAAAGATGCAAGATTTGCCACTACATAATGCCAGAGAAATCTTTATTAGATCACTTAAATTTGAAACACAAAGATTCTATACACGTATGCGAAACTTGCAATCATGTTTCTTATTCTATAACTTTAGCTAAAGCTCACATCACCAAACAGCATAGCAATCCACAGTGTGTTATGTGTCTAAAGACTTTCAAAGAAACAGAATTGTTCAGCCATTCGTGCAAATTTGGTTGCTTGGATTGTCAAACGGTACCTTGTATCCATCAGAAATACTTACTGTCTTATAGGGAACAGGTACAGAATGGAGACACGAAAATGAAATGTTCAGATTGTGATTACATTTATGTAAGTAGAAAAGCTTTGATTGGACATGTGAATAGAGAACATTTAGATCATCACCCATTTACATGTGATTATTGTTCCCAACAATTTTACTCTAAAACATCATTGAAGAATCATCTAAAAAGTTATCACGATGAAAGCGTCGTCTGTGAATTTTGTGATGAAAATTTCAAAAATAAAGCATCGTTAGAAGACCATATTGAAATCTGTCAATTAATTAAAAGACCGTTCAAATGTGAGCACTGTGTGTCTACTTTTGACACGCAACAAGAGTTAGATGGTCATAAAAGTACTAAACATGTGATACTGTACCCTTGCGATCTCTGCACAAAGAAATTTGTTTCTACTTTAAAGTTAAAAGAACATCATCTTAAGATACACAATGGTATACAAATTAAAAGAAAAAGAACCAATATGGAATGTACAATTTGTGATTTAAAGTTTGATGATAGGAAAGAATTTAATGAACATATTAAAACGCACGGTCCAGACGCAAGGTTTCCTTGTAAAACGTGTAAATCTGAGTTTGATGATATCAAAAAACTCCATGCACATATTAGAAAGCATGCTGAAGATGTGATCAAATGCAGTTTTTGCAATAAATTAGTTACAGAAGCATACATGGAGCAACATATCATGTACTGTGAAGCGAATAGAAACGACGAAAGAAACACATGTGAAATATGTGGTAAAAATTTCCAAACAGACTCAATTCTTAAGATACATAAACAGATTCATGTTGATCCAGTCGCTTGCCCTATTTGTGGTGTATTAATCAAGCCAATCTACTTAAAACGACATGTAAACAGTCATACAAATGTTAAAAAGAAGAAACAAATAATAAAGAATATGAAATCGGTGAAATGTCAGTACTGCAGTCATATGGTCACTAGATTTGGGGAATTAGAGTCACATATAAATAGATTTCATTTGAAAATCAAACCTTATGAATGTAATATTTGTAGCAAAAAGTTTTGTGGTAAAGAACGTTTGAAAGACCATATTCAGACTCACTCGTCGGATAATAACTGTTACTGCACAGTTTGTGGAAAAAGATTTGCAAACAAAGTATGCCTGAAAATGCATTCACGTTTGCATACAGGGTTACGGCCGTATCCCTGTGATATTTGTGGGGAGACCTTTAGGTCATCCAGTATAATGAAAACTCATAAAGTTAAGAAACATACGGAGAAAACTGTGCCCTGCCCATTGTGTGATATAATGTTCTATTTGGCAAGGGAAATGCGAAGTCACTTCAAAAAAGTACATTGGAAGAATAAAGGAAAGAAATTCGACCCAAGAGAAATGAAAGAACTAAAAGAGGAATACTATCATCTATTTGAAGATCGGAGAGTACCGAAGCTAAATGATAGTGATCTTGTATTTTCATAA
Protein Sequence
MDDYSTEIDSSDSLIKNMLMNVCKAAKFCCICCECESTLWDLSSEFCIIINGEIHKKLLIDIVSYVFGDEWQEILSSEHICDVCTQKTLQSYVFIYNTKELSKILNEYIENLTSKVNDVNNQLTGVEYENSKVCIVLAKPKEIANYIKNLETKVNPERNEINKPDGTQKRDRKIDVDNFKRVIKLIKKSPKKNKYLTKYGKREIQCKICNETFKTQRLIQSHYKSHEMERCKICHYIMPEKSLLDHLNLKHKDSIHVCETCNHVSYSITLAKAHITKQHSNPQCVMCLKTFKETELFSHSCKFGCLDCQTVPCIHQKYLLSYREQVQNGDTKMKCSDCDYIYVSRKALIGHVNREHLDHHPFTCDYCSQQFYSKTSLKNHLKSYHDESVVCEFCDENFKNKASLEDHIEICQLIKRPFKCEHCVSTFDTQQELDGHKSTKHVILYPCDLCTKKFVSTLKLKEHHLKIHNGIQIKRKRTNMECTICDLKFDDRKEFNEHIKTHGPDARFPCKTCKSEFDDIKKLHAHIRKHAEDVIKCSFCNKLVTEAYMEQHIMYCEANRNDERNTCEICGKNFQTDSILKIHKQIHVDPVACPICGVLIKPIYLKRHVNSHTNVKKKKQIIKNMKSVKCQYCSHMVTRFGELESHINRFHLKIKPYECNICSKKFCGKERLKDHIQTHSSDNNCYCTVCGKRFANKVCLKMHSRLHTGLRPYPCDICGETFRSSSIMKTHKVKKHTEKTVPCPLCDIMFYLAREMRSHFKKVHWKNKGKKFDPREMKELKEEYYHLFEDRRVPKLNDSDLVFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-