Efla001639.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990880.1:9511804-9515283[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0091 0.77 11.2 6.1 1 23 142 165 142 165 0.97 2 17 0.00017 0.014 16.7 3.5 1 23 174 197 174 197 0.96 3 17 0.035 3 9.4 0.8 2 23 210 232 210 232 0.97 4 17 0.00027 0.023 16.0 0.8 1 23 241 264 241 264 0.97 5 17 0.00018 0.015 16.6 1.0 1 23 276 299 276 299 0.97 6 17 7e-05 0.0059 17.9 0.9 2 23 326 348 325 348 0.97 7 17 0.00037 0.031 15.6 1.4 2 23 358 380 357 380 0.96 8 17 0.086 7.3 8.1 1.2 3 19 386 402 384 405 0.92 9 17 0.0045 0.38 12.2 0.8 2 21 410 429 409 432 0.94 10 17 0.044 3.8 9.1 1.5 3 23 442 463 441 463 0.96 11 17 0.00044 0.038 15.3 3.5 1 23 468 491 468 491 0.95 12 17 0.0057 0.49 11.8 0.7 2 23 503 525 502 525 0.96 13 17 0.03 2.6 9.6 0.4 1 23 549 572 549 572 0.90 14 17 0.057 4.8 8.7 0.1 2 23 579 600 578 600 0.95 15 17 0.0086 0.73 11.3 3.6 2 23 604 625 603 625 0.97 16 17 0.033 2.8 9.4 0.1 1 23 691 713 691 713 0.96 17 17 0.21 18 6.9 2.0 1 23 719 742 719 742 0.96
Sequence Information
- Coding Sequence
- ATGTCAATGAAATACGAAGATATTAAGATTAAGATAGAAGAGGAGAGGAGAGACCCAACATCGTTCTTACCTGATGAGCCGATGACTTATGAGATCAAACATAAGAAAAAAAAGAAGAAAAAGAAAAAAATAGAGGATCCTTTTAAAGACCTGGAAAACAAACCGGATGAGGTGCCCCTGCTGGAGATGAACCTGGACGCCGAAGTTAACATCAAAGTCGAGAACATTGAAGTAGAGTTGGATTTCAATGATTTCGCAGCCGACGGCAGCCTCATGGTAGAAGGCCCGCACAGCGAAGACAGCCAAGAGCCGGAGATCAAAATCGAGCCGCAAGGGCACGAAGCCACACTGCTCACGTTCGAGAGCATCATCAACGACCACTACTACCAGGAAACACCGGAGACTATTACAAGAGCACCGATCCACGTCTGCAAAATCTGCCATCTAGTTTTTCAGTCCACGAAGACTCTAAAGATGCATCAGAAAAGAAAACATAAGATATTTAGGAAGTATTTCAAACATTGCTGTGATTATTGTGGTATGTCCTACGAACAAAAGAACAGTCTAATCGCTCATATTAAGAGGAAACATGGACCGGATTCCACTCCGGATGATCGGGAAGAACGGACATGTGATGTTTGCGCCTTAGTCTTCAAGGGAATGACTAGGTTACGTATGCATATGAGAAGGAAACACGGTTCTTTTGAAGACTCCTTCAAATACATTTGTGATGATTGCGGATTGACATATGATAAACATAGAAGTTTAATCGTACATATACAGAGGAAGCATTCGGGCGAGCAGAAGACGATGATCAACCAATTTTACACTTGTCCATTCTGTCCGAAGATATTTGATAAAAGAGAGACTTATGCTCGACATGTACAAAGAAAACATAAAGTAGATGAAGATGGAGTGGTACAGAGCGAGAAAGTTCTAGAAGGAATTAGCAGGAATGAGACAACGGGTGAAATAACTTGTAAAGAGTGTCCCCAAGTGTTTTCTTCAATAACATTCTTGAAATTACACATGAGAAGAAAACATAATGCTTTGAAAGAGGACTTCAGATTGAAATGTAGGATTTGTAATATGTCTTATGATAAAATTGAGAGTTTAAAAAGGCATATAAGAAGGAAACACGACAAGGGATCCCACTGTGAAGTGTGTAATAAGCAGTTTGATACGAGAGAGATGTATTTGAACCATTCTCATGTGAAACCTATTAAAGAATGTACCCTTTGCGGACTGATTTTCGCGTCAGAAGGCAGTCTAGCTAAACATTTGAGGTGTAAACATAATTTGGACGCGCCAAAGACAGTTTTTTGTACGGTCTGCAACGAAGGATTTCACGATAAAAGACAATTGAAACCTCATTTAATGAGAGTCCATTTAAAGGTACAATACACTTGTAAATTCTGCAATAAAGTATTCAAAGCTAAAGAAAGTTATAGTAGGCACATACAATTCAAACATTCGCAAAGTAATATACCCAAAAATCAGTTTCAGACTTGCGATCAATGTTCCGCAACATTTCCAGATGAATTTGGACTGTGTCGCCACGTTAATATGGAACATAGGAACGCTGTGGATCTAACCGGTGTTAATCTATCTGTGGTAAAGGAAGAAGATATAAATAGGCAGACGTTTCAGTGCATAAAGTGTCCGGAAATGTATAATACATGGGAACAGTTAAGGTTACATTTTGAACAGAACCATCACTCGGCTGCCGAGACACAATGTCAGGTCTGCGGCATGATAATCCCAGAAAGTGACTTACAGAAGCATATAAAAACCTTACACAAAACATCATCGTGTCATTACTGCGAATTCAAGACGACAAACCGAGCCAGTATGACACAGCATATGCTTAGGCACAAAAACGCAACGACAATAAACTGTGATTATACCGGCTGTAGATACAAAACATTTTACGAGCTAGCAATGCAGAAACATAAGCAAAAACACGCGGAGTTGGGTGTCAAATTGCAATGTACTAAATGTCCATTTCAGACTATGAATAAGTACATATTGAAATATCACGAAGAAGCACATTTTACAGGGAAAAAGAGGTATGCATGCGACCAGTGTGACTATGCGACGATATTACCCGCTAATCTAGTTCAACATAAATACAAACATTCTAATGAAAAGAGGTTTAAATGCGAAGTCTGCCCCTTCGCAACAAAGTACAATACGTCATTACGTTTCCACGTCAAGAAAAAGCATTGTGATCTCCCTACATTCAGTTGA
- Protein Sequence
- MSMKYEDIKIKIEEERRDPTSFLPDEPMTYEIKHKKKKKKKKKIEDPFKDLENKPDEVPLLEMNLDAEVNIKVENIEVELDFNDFAADGSLMVEGPHSEDSQEPEIKIEPQGHEATLLTFESIINDHYYQETPETITRAPIHVCKICHLVFQSTKTLKMHQKRKHKIFRKYFKHCCDYCGMSYEQKNSLIAHIKRKHGPDSTPDDREERTCDVCALVFKGMTRLRMHMRRKHGSFEDSFKYICDDCGLTYDKHRSLIVHIQRKHSGEQKTMINQFYTCPFCPKIFDKRETYARHVQRKHKVDEDGVVQSEKVLEGISRNETTGEITCKECPQVFSSITFLKLHMRRKHNALKEDFRLKCRICNMSYDKIESLKRHIRRKHDKGSHCEVCNKQFDTREMYLNHSHVKPIKECTLCGLIFASEGSLAKHLRCKHNLDAPKTVFCTVCNEGFHDKRQLKPHLMRVHLKVQYTCKFCNKVFKAKESYSRHIQFKHSQSNIPKNQFQTCDQCSATFPDEFGLCRHVNMEHRNAVDLTGVNLSVVKEEDINRQTFQCIKCPEMYNTWEQLRLHFEQNHHSAAETQCQVCGMIIPESDLQKHIKTLHKTSSCHYCEFKTTNRASMTQHMLRHKNATTINCDYTGCRYKTFYELAMQKHKQKHAELGVKLQCTKCPFQTMNKYILKYHEEAHFTGKKRYACDQCDYATILPANLVQHKYKHSNEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -