Efla017500.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- Znf296
- Assembly
- GCA_905163395.1
- Location
- LR990879.1:9847325-9861986[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.4 2e+02 3.6 0.4 5 23 661 680 660 680 0.84 2 9 0.0012 0.1 14.0 0.5 2 23 697 718 696 718 0.97 3 9 3e-05 0.0025 19.0 0.6 1 23 724 746 724 746 0.98 4 9 8.2e-05 0.0069 17.7 2.9 1 19 752 770 752 770 0.99 5 9 0.93 78 4.9 2.3 6 23 773 791 771 791 0.93 6 9 1.7e-05 0.0014 19.8 0.1 2 23 823 844 822 844 0.97 7 9 1.9e-06 0.00016 22.8 0.2 1 23 850 872 850 872 0.99 8 9 8.3e-07 7e-05 23.9 0.1 1 23 878 900 878 900 0.99 9 9 6.6e-06 0.00056 21.1 1.2 1 23 906 929 906 929 0.97
Sequence Information
- Coding Sequence
- ATGGGTACAGAGAAAAAAGCATTATGGCGCTGCCCGGCCTGCCGTTCTGCCGGTGATAACAGCTCGGCCGCGGTGGCCAACGTGTCACTTTCTGATGTGTTAAAGGAACTCAGAGAATTCAGAAGTGAATTTAGCGGTATGCAAACTGATATCTCAACCATCAAGACCGAAATTCAAAACACTTCTCTTAATATTCAAGAGCTTTCGTCAAAATTAAGTGATCTCGACTTGCGTTACAATGATATGGATGAACGACTAACACTTGTCGAGGGTAAAACGTCATCGCTCGCCAATGCGCAACAGAGCCTCTCTGCTGCCGAGCAAACTATCGCTCACCTCCAGAAAGAAAACAACCTGCAGGACCAGTTTTCACGCTTAAATAACCTAGAAATCGTCGGCGTGCCGCAAAAGAATAGCGAAAACTTAGTGTCTTTATTGCGTGACATCTGTAATAAAGTGGGTTTCTCCCTAGCGGACACCGACATTGACACTATTCATCGTGTTCGCCCTTTCATCAACGCCACTAAATCTCAGCGCGTTGAACCCCCACGGCACCCATCAATAATCGTTCGTTTCACTCAACGTTATCGCAAAAACCAGCTGTTGGCAGCGGTGCGTGCGCGCCGCGGGCTCACATCGGCGGACATCGGCCTGCCTGGCAGCGCCGCACCTGTCTACGTCAATGAACACCTTACCCCCGCTAACAAATCGTTGTTAAGATTGACTCGCGAACGAAAAACGGAACTGAATTATACATACCTTTGGATCAAAGACTACGGCCTTTGCGCGCGCCGCCGAGACGGGCTGTGCTCCGCGCGCGCCTCCGAGGAACTCTGGCTCAGCATCGAGCTGGCCCCGGCGGCTGGCGCGGGTGGCGCGCGCGGCGCTCAGCCCGCTCTGCCCCGAACGTTATACATTGCTTGCTCATACTTTCCGTATGGCTCTCAGCACTCCGTTGCGCTTCAAACATTCTTTAACTCAGTGTCAGATTTAATTGAACAAAATAGCGAATCCTCTTTTTTATTATTGGGTGATTTTAATGTGTCACATGCCACATGGGTTCGTGATAACAACTCCTTATTATCTATTCAAGTTAATAATGATCCCTTAGCTATACTTTTATCGGACTTTATGAGTTTAACTGATCTGCGTCAGTATAACTGGTGCACGAATGTAAATGGTCGTATTTTAGATTTAATATTGAGCAACAGTCTATGTGAAGTTATGCTTTGTGACTCACCTCTCACAGTTGAAGATCCGCATCATAAAGCACTAGTAATATCTTTCAGTTTTGAATGTGGTACTGAGCTTAAAAGTAATAATTGTTACAAGTATATGTTTCATTCCGCTGATTACGAAAGTATCGGTAAAAAATTATGTGATTCTAATTGGGAGATTCTTAATGATATGGATACTGAGCAGGCTGTAACATACTTCTACTCCATCCTGCATAAACTAATAGATGTTTACGTCCCTAAGCGCAAAACTTTTAATGATTCTAAACATCCGCCATGGTTTTCGCGAGCTCTTGTTAAACTTATGCGTGAAAAATCAAAAGTACATGCGAAATGGAAAACTTACCAAAACCCTCTTCACTACCAGGAATTTCGACTTTTACGTTCACGGGTAAAAAAGTTAGAAACTGAGTGTTATAATAATTATGTTAGTAGGGCAGAAGATAAAATAACTAACTCCCCGAAATTCTTTTGGAGTTTTATTAAATCAAAATTTGTTTCTAATAATATACCCGCTTATGTGAGGTATAACGATGTAACCGCTTCGGACGGTGAAACTATATCCAACTTGTTTAACGACTATTTCCACTCTGTGTTTATCTCTTCCAGTCCTATTCTTGATGATGCTAACCTTGATGAAGTTCCATATTCATCAGTGGTGAATATCTCATCAATTAATATTACTGAGAGTATAGTTGCAAAACACCTCAAGTGTATTAATGTTGACAAGGGTGCAGGAGTGGATGGGTGTGACAGAACATTCGCAAGCGAACGCTCATACTCGATACACTGTCAGAGGATGCACTTAAGGCTCCGTCAAGGAGCCCGAAGACCTAACAGGGGCAGCAGGGTGGTCTGCGAGATCTGCGGGAAGGAATGCTTGTCCCGTGCAAACTTAGTGTATCACCAACGCACACATACGGGAGAGAAGCCTTATGCGTGCACAGAGTGCCCCAAGAAATTCAGTGTGTACCAGCGACTGCAGATCCACATCCGAACCCATACGGGGGAGCGCCCCTTCAAGTGCTCCCACTGTCCGAAGGCTTTCAAGCATAAGGCGGCGCTCAACAGGCACGACAGGTGTGGCCGAGTATTCCCGACCCAAAGACAATGCGTTCAACACCACAGGAAAACGCATCTAATGAAGTTAGTACGCGTGAAGCAGGGAGACGCGCCCGCTGTAAAAGTCAAGAATTTATATTCAGTTAAAAAACCCATAGAGAAGAATATAGTATGTGAAGTTTGCGGAAAGAAGTATGCTTCCAATGCGGCGCTCCGTTATCACCAGCGCGTCCACACGGGGGAGAGGCCCTATCAGTGTCCCTACTGCCCTAAAACGTTTCCTATGCCGCTTAACTTTCAGATTCATGTGCGGACTCACACTGGCGAGAAGCCCTACAAGTGTCCGGACTGTCCTAAGGCATTCGGAAACAAGGCAGCGCTGCTGAGGCACGAACGGGTACATACAGGTGAAAAGCCATACGAATGTCCTAAATGTGGTAAAGCATTCACCCAATCCAATTCTATGAAGCTCCACGTGCACACAGTGCATCTCAAGCTGCCCGCGCCGTACAAATCCAAGAGGAGGAAGGCCGCAGCCGCTATGAAGGTTAAGGGTGTTAAAGATGAGGTTATGAATAATGAACAAGTGTGGATCAAGTCAGAACTGGACGGCCAAGAGGTGTACTACGAGCTGGAGCCCAAACCAGACGTGGAAGAGGTCGAGTCGATTGTCAACCAGGACGGAGAGGAGGTCACCGAAGAGATTTTATATGATGAAGGGAAAGAACAGGAGGTGTTTTACGATGACGAAAAGCTGGCGGTGCTCTACGAAGTTGTCTACAACCAGGAATAA
- Protein Sequence
- MGTEKKALWRCPACRSAGDNSSAAVANVSLSDVLKELREFRSEFSGMQTDISTIKTEIQNTSLNIQELSSKLSDLDLRYNDMDERLTLVEGKTSSLANAQQSLSAAEQTIAHLQKENNLQDQFSRLNNLEIVGVPQKNSENLVSLLRDICNKVGFSLADTDIDTIHRVRPFINATKSQRVEPPRHPSIIVRFTQRYRKNQLLAAVRARRGLTSADIGLPGSAAPVYVNEHLTPANKSLLRLTRERKTELNYTYLWIKDYGLCARRRDGLCSARASEELWLSIELAPAAGAGGARGAQPALPRTLYIACSYFPYGSQHSVALQTFFNSVSDLIEQNSESSFLLLGDFNVSHATWVRDNNSLLSIQVNNDPLAILLSDFMSLTDLRQYNWCTNVNGRILDLILSNSLCEVMLCDSPLTVEDPHHKALVISFSFECGTELKSNNCYKYMFHSADYESIGKKLCDSNWEILNDMDTEQAVTYFYSILHKLIDVYVPKRKTFNDSKHPPWFSRALVKLMREKSKVHAKWKTYQNPLHYQEFRLLRSRVKKLETECYNNYVSRAEDKITNSPKFFWSFIKSKFVSNNIPAYVRYNDVTASDGETISNLFNDYFHSVFISSSPILDDANLDEVPYSSVVNISSINITESIVAKHLKCINVDKGAGVDGCDRTFASERSYSIHCQRMHLRLRQGARRPNRGSRVVCEICGKECLSRANLVYHQRTHTGEKPYACTECPKKFSVYQRLQIHIRTHTGERPFKCSHCPKAFKHKAALNRHDRCGRVFPTQRQCVQHHRKTHLMKLVRVKQGDAPAVKVKNLYSVKKPIEKNIVCEVCGKKYASNAALRYHQRVHTGERPYQCPYCPKTFPMPLNFQIHVRTHTGEKPYKCPDCPKAFGNKAALLRHERVHTGEKPYECPKCGKAFTQSNSMKLHVHTVHLKLPAPYKSKRRKAAAAMKVKGVKDEVMNNEQVWIKSELDGQEVYYELEPKPDVEEVESIVNQDGEEVTEEILYDEGKEQEVFYDDEKLAVLYEVVYNQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -