Efla017476.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990879.1:9690652-9698381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1 92 4.7 3.0 3 22 402 418 401 420 0.77 2 15 4.2e-05 0.0036 18.6 2.8 1 23 426 448 426 448 0.97 3 15 0.36 30 6.2 2.6 1 21 452 472 452 473 0.93 4 15 9e-05 0.0076 17.5 4.7 1 23 518 541 518 541 0.96 5 15 7.8e-07 6.6e-05 24.0 1.9 1 23 548 570 548 570 0.99 6 15 0.00077 0.065 14.6 5.2 1 23 600 623 600 623 0.97 7 15 0.0063 0.53 11.7 0.2 3 23 630 651 630 651 0.95 8 15 0.32 27 6.3 0.3 2 21 660 679 659 680 0.93 9 15 0.054 4.6 8.8 0.3 1 23 686 708 686 708 0.96 10 15 3 2.5e+02 3.3 0.2 1 10 713 722 713 732 0.82 11 15 0.058 4.9 8.7 0.2 1 23 739 762 739 762 0.97 12 15 0.00033 0.028 15.8 1.0 1 23 767 790 767 790 0.97 13 15 2.7e-05 0.0023 19.2 0.4 1 23 836 858 836 858 0.98 14 15 5e-06 0.00042 21.5 1.6 1 23 864 886 864 886 0.96 15 15 0.00017 0.015 16.6 1.3 1 23 892 915 892 915 0.97
Sequence Information
- Coding Sequence
- ATGTCTTTTACCTTGAGAAGCGAAACGGACGAACTAATGGTGTGCCGTGGTTGTTTAGCTATTGATGTTAAACTATACAATATACAAGAAAATCGTCTTGTGGAACCTTACGAGGAATTAATAGGTTTCCCGTTATTATCGTCGAGAAAACAATACCTCTGTAGTTTCTGCCGTACACACCTGCTCAAGTTTGCCAAGTTCAGAGCCAGGTGTCGGAAGGCCGAAGAACTGCTCGTCAATGCCGAGATGCAGGGTATATGTACTCCAACCTATATAGAAGAGTTAAGCAGACAATACATAGCCTTCAAACCTAATTATATAAAAACATACATAGATGTCATACATATAAATGAACATATAAATACAGAATTGAATAGTAACATAAAAGAAGAACTTATACCTAAAACAAAAGATAAAACAGCTGTGTTTATTGATGAAACAGATGTAGGGATAGTAAAAGAAGAAATTGATATTGAAATTAATGAACCGTTATGTATGTCTGTTGATGAATTTGGAGACCATAACACAGATTACAAAGATTCTTCGAAAGTTGGTGCTATAAAATCTATAGGAATGGCTAAAAGAACAAATAATATTAAAAACTTTCTTGAAGAATTTGAAGACGATGATGCAGATTACAATGATTTTTCGAAAGTTTGTGCTAAAAAACCAAAAGAAATATCTAAAGAAACAAATAATATTAAAAACTTTCTTGAAGAATTTGAAGACGATGACACAGATTATGATGATGCTGCAAAAGTTCGTGAAAAAAAATCAAAAGAAATGCCTAAAAAAACAAATAATATTAAAAACTTTCTCGAAGAATTTGAAGACGATGACACAGATGTATCATCTTTAGAATTATCATCATCTGATGATGATTCTTTATCATCATCTGATGATGATTCTTTATCATCATCTGAACTTGATTCTTCGAAAGTTAGTGCTAAAAAATCTAAAGAAATTATTAAAACGAATAATATAAATAGCTATGTTGTAGAAAGTGAAGAAAATAACGGAGAAAATGCATCTTCTAATGCTACAAAAGATAAAATAAAAGTAGCAACTGAAACTCATAGAAAAGAGAATATATCTATTTATGATGTTGAAAAAAAAATTGTGATTGGTAATTTTGAAGCTATTCACTTAACTAAAGATGAACAAATTTACGAAATCAAACTTAAAACTAACCAAAAAAACGCATGTAAGGAATGTGGTAAAAAATATAAGAATCTAATAAAACATAATACTAAACATCATAATACAGAATATGTATTCAAATGTGAAATATGTAAAATTAGTTTTAATAAAAAGAAACAATTAAAAAAACACAGAGAAGAACATGAAAAAAAATATATTTGTAAAAATTGCAACTACACAACACAACTAAGAGACAATTTACAACTTCATAAGTGTAGGAAAATTACAGCACCAGTCAAATTAGTTACAGAATATGCTAAATTTAATTTTGAAGTTGAGTATTTAACTATCGAAGAGCAAATGAAAGAGATAGATGACAAACGGAAGAGTGAGAAAAAGAATAGTAATGGTCACAAATGCGAATATTGTGGGAAGAATTATACAACTCAAAAAACATTGGAAAATCACTTTCAAAAAAGTCATGCTGTGAGGACAGGTGACTATGTCTGTGACATATGCAAGACAGTGTTTAGGAATAAATATAAACTGAGAACACACATAAGAAGCCATGGTATGAGATTACTATGCAAGGAATGTAACTTCATAGGTAAACGTCATGATTTGAGACCTCATTATTATTGGCATTCTGGCAAAAAATATACATGTACTTATTGCCATCAAAGTTTTACGAAACAAACCAGTTATTTGAGTCATGTTAGATTAAGACATGCTTCTGAGCTAAACTGGTGTGAGTACTGTGGGGAATCGTTTATAGGTAAAAGAGGTTTATACCAACATAAGCAATTGGCCCATAAACAAATCGAGACCACAGATAATAAATGTGCAAAATGCAATAAAAACTTTTTGGATGACAATGCACTGAAAAATCACATAAATTTGAATCGTTGTGATCTTTTTAATTGTGTCAAATGTGGGGATGCCTTTGTAAATGAGTTTTTATTGAAATATCATTTGATACAGCACAATAATATTAATTATGAATGTAAGAAGTGTAATGTAAGATTTTTAAACATGGCCGCTTATGATAAGCATGAAGGTTCCTGCGGGAGCGGTCATGTTTGTATGCAATGTGGAGAGAATTATGAAACGGGAATTTTGCTAAATGATCATGTTAAAACTGAACATACTGTTCAAATATTTAAATGTGAACAGTGTGGTAAAACATTTTTGAATGCTTATTATTACCGGGAACATATTTCTAGAGCGCATCAGAGCAAGACAACTTCAAGATCATATTGTAAACGACCAAATATTAAATCTAATATCAAATCCAAGTGGACAGCCATGTGCGAGAGCCCAGGAGTACTGAAGTACCATCAACGGTTGCACTCTGGGGAGAAACCGTACCCATGCACCCTCTGCACGAAAAGGTTCATTCTTAAGGCTTTGCTGACGCTACACATGCGCGTTCACACTGGCGAGCGTCCATACAACTGCAAGCATTGTCCGAAGGCATTTAAAACTAAAGGGGCTTTAACTCGCCATAACATCGTCCATACCGGCATTCGTAGGCACGTGTGTCAACTATGCGACAAGAAATTCCAGACATCGTCAGGTGTACAACTACATATCAAAACAGTACATATGAAATTGCCAATGCCGCCGAGGAACCGACGACGGAATAGAGTTAAGGACGAGTAA
- Protein Sequence
- MSFTLRSETDELMVCRGCLAIDVKLYNIQENRLVEPYEELIGFPLLSSRKQYLCSFCRTHLLKFAKFRARCRKAEELLVNAEMQGICTPTYIEELSRQYIAFKPNYIKTYIDVIHINEHINTELNSNIKEELIPKTKDKTAVFIDETDVGIVKEEIDIEINEPLCMSVDEFGDHNTDYKDSSKVGAIKSIGMAKRTNNIKNFLEEFEDDDADYNDFSKVCAKKPKEISKETNNIKNFLEEFEDDDTDYDDAAKVREKKSKEMPKKTNNIKNFLEEFEDDDTDVSSLELSSSDDDSLSSSDDDSLSSSELDSSKVSAKKSKEIIKTNNINSYVVESEENNGENASSNATKDKIKVATETHRKENISIYDVEKKIVIGNFEAIHLTKDEQIYEIKLKTNQKNACKECGKKYKNLIKHNTKHHNTEYVFKCEICKISFNKKKQLKKHREEHEKKYICKNCNYTTQLRDNLQLHKCRKITAPVKLVTEYAKFNFEVEYLTIEEQMKEIDDKRKSEKKNSNGHKCEYCGKNYTTQKTLENHFQKSHAVRTGDYVCDICKTVFRNKYKLRTHIRSHGMRLLCKECNFIGKRHDLRPHYYWHSGKKYTCTYCHQSFTKQTSYLSHVRLRHASELNWCEYCGESFIGKRGLYQHKQLAHKQIETTDNKCAKCNKNFLDDNALKNHINLNRCDLFNCVKCGDAFVNEFLLKYHLIQHNNINYECKKCNVRFLNMAAYDKHEGSCGSGHVCMQCGENYETGILLNDHVKTEHTVQIFKCEQCGKTFLNAYYYREHISRAHQSKTTSRSYCKRPNIKSNIKSKWTAMCESPGVLKYHQRLHSGEKPYPCTLCTKRFILKALLTLHMRVHTGERPYNCKHCPKAFKTKGALTRHNIVHTGIRRHVCQLCDKKFQTSSGVQLHIKTVHMKLPMPPRNRRRNRVKDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00648608;
- 90% Identity
- -
- 80% Identity
- -