Efla006219.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990881.1:2034898-2038398[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.077 6.5 8.3 0.3 1 23 58 83 58 83 0.91 2 18 0.016 1.3 10.5 0.4 2 23 112 133 111 133 0.96 3 18 0.01 0.86 11.1 0.5 1 23 154 176 154 176 0.97 4 18 0.00056 0.047 15.0 0.1 1 23 180 202 180 202 0.97 5 18 0.0041 0.34 12.3 0.4 1 23 207 230 207 230 0.94 6 18 0.0025 0.21 13.0 3.9 2 23 237 259 237 259 0.97 7 18 0.00075 0.063 14.6 3.5 1 23 266 289 266 289 0.97 8 18 0.0051 0.43 12.0 3.3 1 20 295 314 295 317 0.95 9 18 0.037 3.1 9.3 0.1 1 23 369 391 369 391 0.94 10 18 0.052 4.4 8.8 0.2 3 23 421 442 420 442 0.90 11 18 0.00026 0.022 16.1 4.0 1 23 463 485 463 485 0.98 12 18 0.003 0.25 12.7 0.1 1 23 489 511 489 511 0.95 13 18 0.00038 0.032 15.6 1.5 1 23 516 539 516 539 0.96 14 18 0.028 2.3 9.7 0.4 3 23 547 568 546 568 0.96 15 18 6.2e-05 0.0052 18.0 2.1 1 23 575 598 575 598 0.96 16 18 0.75 63 5.2 4.2 1 23 604 626 604 626 0.98 17 18 1.8e-07 1.6e-05 26.0 1.0 1 23 632 654 632 654 0.99 18 18 0.00011 0.0091 17.3 6.7 1 23 660 682 660 683 0.95
Sequence Information
- Coding Sequence
- ATGGGTAATAAACCGATTGACGACAAAATAAAGAAAGCCATCCAACCAGTAAAGGATACGGTGGATAAATCCACCCTAAAGGAAATTGAAAACACAAGAATTAGGAGAAACAGTGCTCTTAATCTATTGCAATATACAAATATATATCCATTTAAATGGTCAAAGAATTTGTACATATGTTTTTATTGTGATAAAAATGTAACTTTTGTTGATATTGAACAATTAAAAACACATATAACATCTTTACACAAAAATCTAGACTCGACACACATAAAAAAATGTCTATGGAAACAAAAAAGGTATGAGTTGGTGAAGGTAAATGTTGCTGACTTGAGCTGCAAACTTTGCGACGAACACATTATTAACTTAGCTGATTTGAAAGCGCATCTAACTAAACATGATAAAAAGGTTGATATTGAAGAAGACGGTATACTACCGTTTAAATTGACAAAAGATCAGTTCGATTGCGCGTTATGTACGAAACAATATGCTGAGTATAAGAGCTTGAGCGAGCATATGAACTCACATTTCAAGAATTACATTTGTGATCAATGCGGTGTAGGTTTCGTTTCGCCCGAACGGCTGAGGAATCATGTATTCACACACGCAAGCAGATCGTACCCTTGCGACTCCTGTGACAGAGTTTTTCGACATGCAACTGCTAGAAAAGAACATTACGCTATTGTCCACATGAACGCCAAGAAGAATAGGTGTCCCCACTGCCTGGAGACGTTCAAGAATTTCTACCAAAAGAAAAAGCATATGAATTCCGCGCACGGAATCAAAGTCAAAGAGTTTCATTGCGATTTATGTTCAAAGTCGTTTATGCAAAGTGGATATCTGCATGCACATAAAAGAATAGTACATTTAAACTTGAAGAGGTTTTCGTGCGATATCTGCGACGTGAAATTTTTCTACAAGTATAAATTGGAGAATCATATGATTTGTCACGGAGGTGTACAAGCGATTACTACAGTTACAGGAGTCAATAGGAAATCGCTTGACGACCTTATAAAGCTACAACTGTCTCAGCAAGCTCTTAAGGAGAGTGTTATAAATATAGTTACGAATACAACTGTATGCCCGTTCAAATATTCGAGAAACTTCCTCTGTCTTTATTGCAATGAGTCTTTTATATTTATGCCGTTATTAGTAGAACATCAAGAGGTTCACAGGAATATGAAAGATGGAGATCTAAAGAAAGTATTGTCCAAAGCCTGCCAAAGCCTTCCTTTAAAGGTGCAACTAGTTAAAAATGCTTGTAAACTTTGTGACACTGTAACAGAAAATTTTGATGAATTAAAATCACATTTAGTCGAGAAGCATAATAAGAGAATTAATATGGACGACTGTGGAGTTATACCATACAAAATAAGAGAAACAAACTTCGAATGTGTACATTGTGATAAGAAATATGTTAAATATAAAACACTGAATATGCACATGAGACAGCATTACGGGAAATTCTTTTGTGATCAATGTGGTGAGGCATTTATTTCGCCTAAAGCTATAAAAATGCATTTGGTTTCACACGAAATTGGAAAACATCCGTGTAATATATGTAATAAGGTTTTCAAAAGCGAAATGAACAAAAAAGATCATGTGAAAAGCGTACATGATAAAACTAAAAGGAATCTGTGCAATGTCTGCAAGGAACCATTTCGTAGCTATTACGAGAAAATGAAACATACTGAAATGGTGCATGGAATTCAAAGTGCCAAATACAAATGTAGTTATTGTCCGAAGGTTTTCTTTGTAAATTCCCACTGGAAGACTCATGAACGTGAGATTCATTTGAAAAATGTTATATATTCATGTGATTTGTGTAGTTATAGACATCACAAAAAGAGTGCACTACAATTGCATATGATTTCTCATACGGGTGAGAAGAAATATACGTGTAATGTGTGTAACAAGGCGTTTGCGAGGAAATATACCTTGAAGGAACATCTGCGGATACATAGCAATGATAGGAGGCATGTGTGTAGCTACTGTGAGAAAGCATTCGTGCAGAAATGTAGTTTGAAAGGACATATGAAGACGCATCATCGCGAAATGTCACAAACTTAA
- Protein Sequence
- MGNKPIDDKIKKAIQPVKDTVDKSTLKEIENTRIRRNSALNLLQYTNIYPFKWSKNLYICFYCDKNVTFVDIEQLKTHITSLHKNLDSTHIKKCLWKQKRYELVKVNVADLSCKLCDEHIINLADLKAHLTKHDKKVDIEEDGILPFKLTKDQFDCALCTKQYAEYKSLSEHMNSHFKNYICDQCGVGFVSPERLRNHVFTHASRSYPCDSCDRVFRHATARKEHYAIVHMNAKKNRCPHCLETFKNFYQKKKHMNSAHGIKVKEFHCDLCSKSFMQSGYLHAHKRIVHLNLKRFSCDICDVKFFYKYKLENHMICHGGVQAITTVTGVNRKSLDDLIKLQLSQQALKESVINIVTNTTVCPFKYSRNFLCLYCNESFIFMPLLVEHQEVHRNMKDGDLKKVLSKACQSLPLKVQLVKNACKLCDTVTENFDELKSHLVEKHNKRINMDDCGVIPYKIRETNFECVHCDKKYVKYKTLNMHMRQHYGKFFCDQCGEAFISPKAIKMHLVSHEIGKHPCNICNKVFKSEMNKKDHVKSVHDKTKRNLCNVCKEPFRSYYEKMKHTEMVHGIQSAKYKCSYCPKVFFVNSHWKTHEREIHLKNVIYSCDLCSYRHHKKSALQLHMISHTGEKKYTCNVCNKAFARKYTLKEHLRIHSNDRRHVCSYCEKAFVQKCSLKGHMKTHHREMSQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -