Efla003600.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990866.1:11095810-11102264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00031 0.026 15.9 2.8 1 23 153 175 153 175 0.99 2 13 0.00033 0.028 15.7 1.3 3 23 180 200 178 200 0.96 3 13 2.9 2.5e+02 3.3 0.0 2 23 206 227 205 227 0.93 4 13 0.25 21 6.7 4.5 2 23 234 256 233 256 0.96 5 13 3.1e-07 2.6e-05 25.3 0.5 1 23 273 295 273 295 0.98 6 13 4.4e-05 0.0037 18.5 4.6 1 21 301 321 301 323 0.96 7 13 5.9e-06 0.0005 21.2 2.6 1 23 329 351 329 351 0.99 8 13 1.4e-08 1.2e-06 29.5 1.8 1 23 357 379 357 379 0.96 9 13 9.4e-06 0.0008 20.6 0.4 1 23 385 407 385 407 0.98 10 13 4.5e-06 0.00038 21.6 0.7 1 23 413 435 413 435 0.98 11 13 0.074 6.3 8.4 5.4 1 23 441 463 441 463 0.97 12 13 9.5e-07 8.1e-05 23.7 1.1 1 23 469 491 469 491 0.98 13 13 0.00096 0.081 14.3 0.3 1 22 497 518 497 519 0.92
Sequence Information
- Coding Sequence
- ATGCAATCTGTAAATAATTGTTGTCGAACTTGTATGAAAGAAAACATTCAATTAATAGACTTGTTCCAACCTTTGATCGTAGATCAATGTATTGACCTTTTATCAGAAGCTTTGACGAAGTGTACAGGAATCGAGATATCCAAAGATGATGGTTTACCACAAAATTTATGTGATGACTGTGTCAAGATCACTCAAATGATGTACAAATTCCGTAAACAAGCACTTCTGGCTGATTCTGAATTTAGGAAAATACTGTCCAGTCTTAACAGTATAAAAGATGAAGAAATTAAAACTGAGTTGAAATCGGAAGATGATGATGATCTTAGTTCTAACATTTTACTAGATGATTACACAGATAATAAATCTTATGAATTTGAGTTTCCATTACTGAAGACTGAAGATGATGAGTTCACTATTATTAATCAATGTGAGAATGTCAAACCCGAGAAGAAAAAATACACTTGCGATTGGTGCCTTAAACAATACAGTAAGAAACGCAGGCTAAAAGTTCATATGAAAACTCATGAAAAAATCATTTGTGAAATTTGTAAAGAACATTTTGATAGTAGACAGTTGTTTCAGAAACATATGTCTATACATACAAAAGTTAATAAGAAATGTGATGTTTGTGAAGAGGACCTTGATACAGAGCCTTTATTGATTGAGCATGCATTGTTGCATGCTGGTGAAGTCAATGTAAAATGTCCATTATGCGATGAAATGTGCAATAGTAGACGCTCACTTCAATTCCATCTAAATCGGTGTCATCTCAATGGTAAAAATAGTTCTAAGATTAGATCAACAAAAAAAAAATTGTATGTCTGTGATATGTGTCCAAAAGAGTTTTCTACAAAATCATTATTGAACAGGCATGTTAAGCTGCATAATAGTGAGAGACCGTTCCAGTGTACAAAATGTTCTAAAAGTTACTCCAGACAAGACCAGCTGGCTTCGCACATGAAATGTCATGATGGTGTTAAACCGTATACATGTTCAATTTGTAACAAAGCCTTCACTCAGATGTGCAGTCTCAAGGATCACTTGCGTATTCACACTGGCGAGACCCCATACCTTTGCTCACAGTGCGGCAAGAGCTTCAGCAATAGCTCTAACCTTCGCCAGCACATGATGAGGCACACTGGTGTCAAGCCGTTCTCATGTAGTCTCTGTCCAAAGACATTTGCTACTAAAGGTCAAATGACCGCCCACGTGACCACACACACCGGCGTACACCCATACAAATGCGAAGAGTGTGGAGGGTCATTCACGAAGCCGAATTCACTGAAGAAACACAAGATGATACATCTCGGTGTTAAACCTTTTGCGTGTGATTCTTGTGTTATGCGGTTTTCATGCAAGGAGCACCTGAAGCGTCATTACCGCATTCACACGGGGGAAAAGCCCTACCGCTGTCAGCAGTGCGAGCGCGCCTTCACGCAGAGCAACGACCTTGTCAAACACATGCGACTGCACAACGGACAAAACATATACCAGTGCACAGTATGCGGCATAAAATTTAGACTGATAAGCGAACTCAAACTGCACTACCCAACGCACTACATCAACGGTGATGAAGTCCCGAAGATTCCAATCAGCAAAGGTGTCGAGGCTCCAGTCCTTATTCTGAAGCCACAGGAAACTCAACCCATTCCCGAAAGTATAAAAGATATGGACCCTAGAATAACAATTACTATAAATAGCAATGGTTTGGACAAAAATGGCCTAGCTGGAGATATAACAATTAATTTAAGCCCACAGAAAAGCTAA
- Protein Sequence
- MQSVNNCCRTCMKENIQLIDLFQPLIVDQCIDLLSEALTKCTGIEISKDDGLPQNLCDDCVKITQMMYKFRKQALLADSEFRKILSSLNSIKDEEIKTELKSEDDDDLSSNILLDDYTDNKSYEFEFPLLKTEDDEFTIINQCENVKPEKKKYTCDWCLKQYSKKRRLKVHMKTHEKIICEICKEHFDSRQLFQKHMSIHTKVNKKCDVCEEDLDTEPLLIEHALLHAGEVNVKCPLCDEMCNSRRSLQFHLNRCHLNGKNSSKIRSTKKKLYVCDMCPKEFSTKSLLNRHVKLHNSERPFQCTKCSKSYSRQDQLASHMKCHDGVKPYTCSICNKAFTQMCSLKDHLRIHTGETPYLCSQCGKSFSNSSNLRQHMMRHTGVKPFSCSLCPKTFATKGQMTAHVTTHTGVHPYKCEECGGSFTKPNSLKKHKMIHLGVKPFACDSCVMRFSCKEHLKRHYRIHTGEKPYRCQQCERAFTQSNDLVKHMRLHNGQNIYQCTVCGIKFRLISELKLHYPTHYINGDEVPKIPISKGVEAPVLILKPQETQPIPESIKDMDPRITITINSNGLDKNGLAGDITINLSPQKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -