Efla019354.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990857.1:12244252-12252895[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0061 0.51 11.8 1.0 3 23 699 720 698 720 0.96 2 22 0.056 4.7 8.7 0.6 1 22 1101 1122 1101 1122 0.95 3 22 8.4 7.1e+02 1.9 0.3 1 22 1164 1185 1164 1187 0.82 4 22 0.0019 0.16 13.4 0.9 2 22 1197 1217 1196 1217 0.94 5 22 0.14 12 7.5 0.1 3 23 1268 1289 1266 1289 0.95 6 22 0.022 1.9 10.0 5.4 1 23 1295 1318 1295 1318 0.95 7 22 0.16 13 7.3 0.0 1 23 1344 1367 1344 1367 0.90 8 22 0.0069 0.58 11.6 3.5 1 23 1372 1394 1372 1394 0.97 9 22 0.024 2.1 9.9 0.3 1 23 1400 1423 1400 1423 0.95 10 22 0.0013 0.11 13.9 1.3 1 23 1437 1459 1437 1459 0.98 11 22 0.00022 0.019 16.3 1.8 1 23 1507 1530 1507 1530 0.97 12 22 0.0085 0.72 11.3 1.8 1 23 1591 1614 1591 1614 0.96 13 22 0.0012 0.099 14.0 2.0 2 23 1642 1664 1641 1664 0.95 14 22 0.11 9.3 7.8 0.1 2 23 1670 1692 1669 1692 0.93 15 22 0.012 1.1 10.8 0.2 1 21 1737 1757 1737 1758 0.95 16 22 0.0015 0.13 13.6 0.6 1 23 1768 1790 1768 1790 0.93 17 22 0.00016 0.013 16.8 0.2 2 23 1882 1904 1882 1904 0.93 18 22 2.2e-07 1.9e-05 25.7 1.1 3 23 1911 1931 1910 1931 0.98 19 22 0.024 2 9.9 0.8 1 23 1949 1971 1949 1972 0.93 20 22 0.089 7.5 8.1 0.4 1 23 1994 2016 1994 2016 0.97 21 22 0.022 1.8 10.0 0.4 1 23 2022 2045 2022 2045 0.95 22 22 0.00035 0.029 15.7 0.8 1 23 2053 2076 2053 2076 0.97
Sequence Information
- Coding Sequence
- ATGAGCGTAAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTACAAAAATCAAGGATTGTGTCTCTGTGCAGATAAGCGAAAATGACGACCTGCCAACTAATGTCTGCAGGAAATGCATGGATAATGTAAATAACTGGCACATATTTAAGTCAGTTTGTGAAAGGACACAAAACAAACTAGAATCTCTGTTAAAAAAAGATGGCAACCAACTAGAAGAGGTGAATATTAAAGATGAACCACTGTCTGATGAAGCTTATGATGATGGAGTGGTTATTGAGGGGGGTTACCCAGATAGTGAGAATCCCGCTAACTCTGCTAACAAAGTTCAACCCGAAGGTCCACCGATCTTGGCTTCATTGGGACTCACACCAAGGAGTGATAAGAAATATATAGATCCTCGAATGGACTGGCCTCGGGTCCATGCAATTTTGGACATGGTTCAAGACGATGAAGTCACTGATTCATTGCAGTGCATGGAAGAGAGTGACATTTTACATGTTTCCGACCATGATTCTGATTCAGAATCTGAACTGCAAACTATTGTTGATGACAGTTTTAAAAATAAAAATTCATTCTTACTAAAGAATAACAGTTACATATCAAAGATACCAAAGGGTACTGTTTCACAACATATCACTAAAGCAGAAGGAGTTCGACGGAATAAAAATACACTCCCAACTGAATTTTGTCCACAACCAAAGAATGCTTGGCAGAAGTTTTTCACTGAGGATCTTTTGGAAGTTATAGTGACTTCTACTAATTGCAATATTAATAAAAATGGTCATGATTCATCAAATTCTACCAATATTGTAGAAATAAAAACATTAATTGGTATATTGTATTTACATGGAATATTGAGACCTACTCATCAGAGATGCAGTGACCTTTGGAACAGTGACACTGGTGTTCCGTGTGTAAAAACTGCTATGAAACGAGAGAGATTCAAATTTTTACTTCAGAATTTATGTTTTGAACAAGAAGATGATATTATCCAATTGGATATAATGAAACGGATACGTAAAGTTTTCGAAATATTTGCTTTGAATTGTAGAACATCATTTCACGCGATGAATACAGTAGTCTTAGACGAGATTATGATACCAGTTTATGGCCCTTGCCCGTTTAGATATGAAATTAGCAAGAAGCAATTGAAAAGTGGCATGAAAACAGTTTTGTTAGTTGACCCTTCAACTTTCTATGTGAGCAATTTGGATGTTATAACTGATCCATATTTCAGAGCTGATGGGATTGTAAAAAAACTTGTACAACACCTGGCTGGAACTGGCAAGACAGTAATAACGGATAGTTGGTATACTTCGGTAGATTTGATTGGCCAGCTGCTAAAAGAATATCAACTTTTTTCGTTAGCTGCTGTGAATCCAAAAGATGACATTATACCTCCATTATTTCTATCGCAATGCAGGGAAGAGAAGTCAATATTGTCTGGTTTTATGAATGATGGTGTTACACTTACTTCATATACATCTTCAAAATTGAAATCTATGAATGTTATGACAAATGAAAGGAAATTTTATAAAAGAAACTTCAAGACGCATACAACCGCTGTATTTGAGTATAAGAAAAATCAGTCGGCCGTTGAAGTTATTGATGTGCTCATGCATTATTATTCTACCATGCAAAATACGAATAACTGGACACTATCATTATTTTTCACGTTGCTCAATATAGCGGCGGTTAATGCGCAAGTGATATGGACAGTACATAATTCTACGAGCATTGTAAAACGTCGTTCATTTATAAACCAACTTGCTATAAGTTTGCTCGACCGCCAGAATCCCATATCAATGGATATAGATAGTAATATTAACTTACTTATTTCAAGAGATGTCAAAGGATTGGAGAGTGACAAGGATGAAGACGAAGAAGAGGAAGAAGAAATAAACGAGGCTGGCCAATCATACTCCAACATTCCCAGCATGCCAGAGGTCTCTATAACAGTAATGCGTCCCACCGGTGAGACATTACACGCTCGTCAAGGTATCCAACAGCTTGCATCCAAAGATTGTCTAGTTTGTGGTCGATCATACAGATATTCCCATAACGCTAGACGACATGAGCTCACTGCCCATGGTTTTGATAGGTATACAAACAAAATAACAACTAAAAAGTCGCACACGCGTATGCAACCTAAACTTCGGCCGAATCCATTTAATCCAAAGGCTCGTTTAATGCCCAGCAACAAAATGCACCGCATGCCTAAACCAGTTCCAAAAATGATGCCACACAAGATTATTACCCCACCAAAACCTATTCTTGTAAAACCTTCAAAATTATCTCAGAATAATTTGCCTTATCCCCTTCGGATTAAAGCCCTAAAAGATTTACAAATTAAGAAAAAAGAACCACAGATATTAAAAACATTATTAACGTCAAAACCTGAAGTTCTCGTGTCTGAACCTGAAATAATTAATTCTGGTCCAGAGAGCCCTGAAACGTTAATATCTGAACCAGAAATTTCTTCATTCCAAGTAGAAACTATTTTGTCGGAACCAGATGCTTTTGATCAGACGCATGATCAGACTCAGTGCGATGAGGAAGAAGGCGAAGCTATTAATCAAAGCCAACAATATGATACGGTCGATATGGATTCGGAAAACGAAATTGAGATTGCACGACAGCAAGAAAATGTAGATGAAGATGACAATATGGGCGAACAAGACGCTGAAGACAATAATATGCAAAATGAGGATGATAACGGGGAAGGCGCCCAAAGTGATATTGAAAAAGATAACCTCGAAGATAATGGAGAAAACGAAGAAAATATGGAACTGGAAAATATGGATGGAGAAGTCAAAGGTGAAAATGATGATGACAAAGGTGATGAAGGTAATGACGACCGGGACCAGGAAGAAATGGAAGGGAACAATGAGGACAACGAGGAGGAAGAGGATGATCTTCCTCCAATGGGCTTGGCACCTGTTGTGGAAATTAACGAGGATATGCAGACCAACTCGTATAATAGCGAGGCAAACGAAGAGGAAGAGGAGGAACTTGACGAGACAAACGATCTCAATGAAACTGAAGCTGAAGAGCAAGAACTTGACCCCGATAAAGTTTACGTAACTAAAACGCAAAGAGATTTTATCCAAAAATATCGTGATATCATCCAACAAATAAACACCAAGACTTGTCTTTGCTGTGATAGAGAACATCCTCGCCGCAAAGCTGTAATCCAACATTTACAGAAAAATGGACACAAAGTCCCTAAGCATACGTGCTATAACTGCGTGGTCACATTTAGCCATATAGGTGCGCTGCTTAGTCATATGAGATCTAACACTTGCACAGATTTATGGAAAGTCATTTATAATGAATCTGGCATCACAGATGACATGGTTTTGGAAGATGAGCCCAAAGAAGATAAAGTTCAGTACAAGGACATTCTCAGTGCTAGATCTTATGCTTGCAAATTGTGTCCAGCAAAGTTCCAGTTAAAACAGTTTATAATGAAACATGTGTTAGATGTTCATGAGGATGGCCAGTCAAGAGTTCCCTTAGTTTGTGTCCACTGTGGATCCAGATTTAAGGATAAGAGTTTAATAAAGAAACACATCCGTAAAGGCGAATGTACTGTATACATTGCATGTGATTTGTGCAGTGAGAAATTCTTAAATATGCAAGATTTCAATGACCATGCACTGGCAGTGCATGCTGGAAATTTAGACCAGTCTGATAATCAAAGCAAATGCGTTGATGGGCGACCCACTGATTGCCCTATTTGTGGGAAGAAAAATAGTATTTATCCGAATTTGGTGAAGCATTTGAAGATAATACACAATGAAGAGAAACCACATTATTGTCAACACTGTGATTCTAAATTCGAACATGCTACAGAACTCAATAAACATATTTATATGGAACATTCAGATAGATCTCTGGGTGTCCAGAATAGTGATTTGGACATGTCATTAGTGAAAGAAGAAGCTGAAGAATACCACTACTCTTGCACTGAATGTAATGCAATCTTTGAAACGGTTGATGCTTGGACAGATCACCAGGTCGCGGAGCATAATCAAGTAGCCCACCATTGCGACCAATGCGATAAAAAATTCTTGCGACCGTCAGAGTTGGCCGAACACAAAAACACCCACTTACGAGTGAAATTTTATCCATGCAGTGTTTGCAGTAATTCTTATAGCACTCCACAAAAATTATCTGAACATGTACAACAAACACATCCTGGAGTTAGTGGTGCTTTCAGTTCAACAGAATCAGAATTTTATTGTGACATTTGTATTAGATCGTTCAAAAGTCGTCAAGCTTACTCCAATCATATGCGTATTCACGCTAAAGTTCCCACTACTAATAGAAAGCCTGGTGAGCCTAAAAGTTTTGCACCACAAATAATAGGGAAACCGATCAGACAGTTTCCAGCAATGCAACCTAATTTTGCATACAAGCCAAATTGTAATGTTCCTAACGCACCGTATTCTTGTGATATATGTGGCAAAGGTTTTATGCATAAGAAAAACATTTGGAAACATAAGAAGGTGTTGCATGCGGATCTACTTAACGATAGAAATGATAGTGAGGAAAATACTATGCATGCTTCTACAGAAGAAGACGATTATAATGTTGATGAAAATGGCACTATTTTGTCTACGCCACAATTTAACAGTTTTAACTTTGCAAACTTTACTAATAATGTACAACCACAAGTGCAAGAAGATCCTATGCCTTTCTCTTGTGAACTTTGCTTCAAAAGATTCCCGCTTAGAACTAGTTTGTGGAAACACAAACGCGCTAAACACGGAATCATTAACGCCAGTGCCGGTGGAAGTTCTGAGCCTCTTGCACAAGGTGCACCGCCAAGTGAAGGCAGCAGCCGATCTAGTTGTACAATATGTAAGATAAGTTTTTCAGATAAAAAATCTTATTATCGTCACAGGAAGAATGTTCATAAATCTTCCACACAGATGTGCAAAATATGCGGTAAACCATTAAACTCCACACTAGAACTTTATGAGCATTTAAAAGCTGCGCATGCGCGCGAATTATTAGGTTACAATGACAATCAAGGATCAAGTAAATCCCAGGATTTGAAACATGAAATGGAAACAGAATATGAAAATGACCAAGATATTACAACAGCTGACCCTAACGATTATCAAGCCCGTTATCCGTGCGATACGTGCGGAAAACAATTTGTAGGATTACTTGCCTTACAGAATCATCAGTGTATCAACCAAGTCCAATCACAGCCGCAGACCTTTGATTGCGAAATCTGTCATAAGAGTTATACATCTATTGCGGCTCTTAAGAGTCACAGAGGCTGGCATTTACGCTCACCTGATGGAAAAGCAGCTGCTAACAACACTGGGTTATGGATGCCGCAAAACAAAGTTACGAGTAAAGTTAGCAAACATGAAGTTGTTGAAAGTGCTCCAATAAGTCGTGCCCCACAATCGACCCCGATGCCGCCGGCTCAAGTGGCAAAAAGGAGACTGCCACCTGAAGTAGAGGTTACTGTTGTTAATCCAAATAAAAAAATGCGTTCTGACGATTCAATTGAAATGGAGCAGAAAAATTTGGCAGGTGGATTAGAGGACCGATATTGTGATATTTGTGACAAGGAGTTTACAAAACGAGCGGCTTATCAGCGCCATATGGATGAGGTGCATCAACCTAATTCTGTATTTTGTCCGGTATGCGACAAGAGCTTTACTCGTAAATCGACTTTAATTGTACATATGAAGAAACATTATGAGGGCGGCCAGGGAAGTTCTGGTTCGGGCCTGGTTGAGGAGGAAAACCATGCTTGTGATCTATGTGGTGCACAATATGACAACGAGAAAGCATTAAGAGCTCACCGTGCAAGACATCACGGGGATGAGTCTGAAGAGTCTGACGATGATGGAAGCTTAGCACCTATTGCTCCACCTGGTGAGTTTACTTGCAAACAGTGCGGAGATGGCGTCGCCACTCCACGAGACTTGATCACGCATCATACTATGCATGCGACACCTTCAAGGTTCTTTTGCAACATTTGCAAGGTGTACTTCGTAAGGGCCCTGGACTTGTCCGCGCACACGCGTGCGAGACATGCGGACAACGAGAAAGTTTTCTTCCCCTGTGCCATGTGTGATCGTTTCTATATGAACAAGAAGAGTTTGCAGCGGCATATTGATACATCTCATTAA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLATKIKDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKSVCERTQNKLESLLKKDGNQLEEVNIKDEPLSDEAYDDGVVIEGGYPDSENPANSANKVQPEGPPILASLGLTPRSDKKYIDPRMDWPRVHAILDMVQDDEVTDSLQCMEESDILHVSDHDSDSESELQTIVDDSFKNKNSFLLKNNSYISKIPKGTVSQHITKAEGVRRNKNTLPTEFCPQPKNAWQKFFTEDLLEVIVTSTNCNINKNGHDSSNSTNIVEIKTLIGILYLHGILRPTHQRCSDLWNSDTGVPCVKTAMKRERFKFLLQNLCFEQEDDIIQLDIMKRIRKVFEIFALNCRTSFHAMNTVVLDEIMIPVYGPCPFRYEISKKQLKSGMKTVLLVDPSTFYVSNLDVITDPYFRADGIVKKLVQHLAGTGKTVITDSWYTSVDLIGQLLKEYQLFSLAAVNPKDDIIPPLFLSQCREEKSILSGFMNDGVTLTSYTSSKLKSMNVMTNERKFYKRNFKTHTTAVFEYKKNQSAVEVIDVLMHYYSTMQNTNNWTLSLFFTLLNIAAVNAQVIWTVHNSTSIVKRRSFINQLAISLLDRQNPISMDIDSNINLLISRDVKGLESDKDEDEEEEEEINEAGQSYSNIPSMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHGFDRYTNKITTKKSHTRMQPKLRPNPFNPKARLMPSNKMHRMPKPVPKMMPHKIITPPKPILVKPSKLSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEISSFQVETILSEPDAFDQTHDQTQCDEEEGEAINQSQQYDTVDMDSENEIEIARQQENVDEDDNMGEQDAEDNNMQNEDDNGEGAQSDIEKDNLEDNGENEENMELENMDGEVKGENDDDKGDEGNDDRDQEEMEGNNEDNEEEEDDLPPMGLAPVVEINEDMQTNSYNSEANEEEEEELDETNDLNETEAEEQELDPDKVYVTKTQRDFIQKYRDIIQQINTKTCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKVIYNESGITDDMVLEDEPKEDKVQYKDILSARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLVCVHCGSRFKDKSLIKKHIRKGECTVYIACDLCSEKFLNMQDFNDHALAVHAGNLDQSDNQSKCVDGRPTDCPICGKKNSIYPNLVKHLKIIHNEEKPHYCQHCDSKFEHATELNKHIYMEHSDRSLGVQNSDLDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQTHPGVSGAFSSTESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKSFAPQIIGKPIRQFPAMQPNFAYKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMHASTEEDDYNVDENGTILSTPQFNSFNFANFTNNVQPQVQEDPMPFSCELCFKRFPLRTSLWKHKRAKHGIINASAGGSSEPLAQGAPPSEGSSRSSCTICKISFSDKKSYYRHRKNVHKSSTQMCKICGKPLNSTLELYEHLKAAHARELLGYNDNQGSSKSQDLKHEMETEYENDQDITTADPNDYQARYPCDTCGKQFVGLLALQNHQCINQVQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTSKVSKHEVVESAPISRAPQSTPMPPAQVAKRRLPPEVEVTVVNPNKKMRSDDSIEMEQKNLAGGLEDRYCDICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGQGSSGSGLVEEENHACDLCGAQYDNEKALRAHRARHHGDESEESDDDGSLAPIAPPGEFTCKQCGDGVATPRDLITHHTMHATPSRFFCNICKVYFVRALDLSAHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIDTSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -