Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990873.1:4111989-4130220[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00011 0.0097 17.2 6.0 1 23 195 217 195 217 0.97

2 13 4.7e-07 4e-05 24.7 0.3 2 23 230 251 230 251 0.98

3 13 3.4e-05 0.0029 18.9 3.2 2 23 260 281 260 281 0.98

4 13 0.00032 0.027 15.8 2.1 1 23 287 309 287 309 0.98

5 13 4e-06 0.00034 21.8 1.1 1 23 315 337 315 337 0.98

6 13 1.7e-05 0.0014 19.8 8.4 2 23 344 365 343 365 0.97

7 13 2.5e-05 0.0021 19.3 0.7 1 23 371 393 371 393 0.98

8 13 1.3e-05 0.0011 20.2 1.4 1 23 399 421 399 421 0.98

9 13 0.00033 0.028 15.7 1.1 1 23 427 449 427 449 0.98

10 13 0.0004 0.034 15.5 1.8 1 23 455 477 455 477 0.97

11 13 0.00013 0.011 17.1 2.0 1 23 483 505 483 505 0.97

12 13 9.2e-05 0.0078 17.5 1.9 1 23 511 533 511 533 0.98

13 13 0.029 2.4 9.6 3.2 1 23 587 610 587 610 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00011	0.0097	17.2	6.0	1	23	195	217	195	217	0.97
2	13	4.7e-07	4e-05	24.7	0.3	2	23	230	251	230	251	0.98
3	13	3.4e-05	0.0029	18.9	3.2	2	23	260	281	260	281	0.98
4	13	0.00032	0.027	15.8	2.1	1	23	287	309	287	309	0.98
5	13	4e-06	0.00034	21.8	1.1	1	23	315	337	315	337	0.98
6	13	1.7e-05	0.0014	19.8	8.4	2	23	344	365	343	365	0.97
7	13	2.5e-05	0.0021	19.3	0.7	1	23	371	393	371	393	0.98
8	13	1.3e-05	0.0011	20.2	1.4	1	23	399	421	399	421	0.98
9	13	0.00033	0.028	15.7	1.1	1	23	427	449	427	449	0.98
10	13	0.0004	0.034	15.5	1.8	1	23	455	477	455	477	0.97
11	13	0.00013	0.011	17.1	2.0	1	23	483	505	483	505	0.97
12	13	9.2e-05	0.0078	17.5	1.9	1	23	511	533	511	533	0.98
13	13	0.029	2.4	9.6	3.2	1	23	587	610	587	610	0.97

Sequence Information

Coding Sequence: ATGGCTGCTGCTAATGCCAATAAATTGCAGAATCTAAAATTCGATAAAATATGTCGGGCTTGTTTGGAAATAAAGAAGGACATGCGGCCTTTGTTCGAGCAGTTGACGGCAACGATGCTGATGGGAATTTCGAAGGTGCAGGTTTCCGTCGGCGATGGTCTACCGTCGCAGTTATGTCTTCAATGTGTGCACCAAATCTCCCGGTGTCACGCATTCAAAGACTTGGTGGAGAGGAATGACGTCACGCTGCGCGAGCATGCAAGGTTCCGCGCAGAACAAGCCCTCAAATTAAAACGGGAAGAGGAAGAAAAACTTTTGAATCTAAATTGCCCGGAGCCAGCATATATTCACTACATGGAGGTTCCAATGGTGAACAATACCAATCAGATCCTTGAGGGGTTCTTCAACACAACCCCAGAGCAGACCAACGAATGCAAGGACGAACAGCATAAGGAAAATACGGAAACTGAACCGGTCGAACAACTACCTACAACAAAAGAAGAGGAAGCACTTAACTCGGACGAGGAGAACTATCTACAGTTAGTAGTCTTCCAGGCGACTAGTTCAGTAACACCTGGCAGGCATGTTTGCAACCTCTGTCATAAGGAGTTCAAGAATGCCCGATTCCTCAAACAGCATATGAAGTCTCATTCCAACTGGATAAAGGCAAACTGCAAGAAACCACCCACTTGCCCAATATGCGATAGGACTTTTAAGGGTCCAGGAATGTTAAAAATGCATATGCGAACTCACGAGGAAAGACCTCCAAAGCAGCCAACATGTTCGGTTTGTCAAAGGACGTTCACCACGAAGACATTACTCTACCGTCACAGACAAACTCACTTCGAACAGAAAACCCATCAATGTACTGTGTGTGAGAAGAGGTTCTTCAGCGGTTACGCACTGAGGTCTCACATGGCCAGGCATAGAGGCGAAAGACCTTACGTCTGCTCAATGTGCAACAAGAGTTTCTATAATCCGACAGATTTAAAGGTCCACTTCCGTTTGCATACCGGGGAGAAGCCGTTAAAATGTTCTGAATGCAACAAGACCTTCCGCCGCCACTCCACGCTCTGCCAGCACATGAAGAAGCACCGCGGCATCCGCAACCACGTGTGCTCCGTTTGCAACAAAGGATTCTACGAGGTCTCCAAACTGAACGCTCACATGAGGGTTCACACTGGTGAACGTCCATTCGAGTGTCAGTTCTGCGAGCGCAAATTCGCGCAGCAATCAGCATTAATTTACCACCGTCGTACCCACACTGGCGAAAAGCCTTACAGCTGCAAGTTATGCTCAGCTAGGTTCACCACATCATCAGCCAGGAACAACCATATGGTCACGCATACGGGAAACAAGAGGTTCGTATGCCCGGTATGCTTCAAGGGCTGCACGTCCCGCAGCGAGCTGCGCGTGCACAGCAGCAAGCACACCGGCGAGAAGCTGTTCGCGTGCTCGGTGTGCGCGCAGCGGTTCAGCTCGGCCTCGCACCTGGCCGCGCACCGGCGCCACCACACCGGCGAGCACAAGTACCACTGCGCCGTGTGCGGGAAGGGATATATAGAATCAAATTCATATAAAAAACACATGAAGACACATGAAGTGAAAGGTGAAACTGAAGGTTCAACATCAGACAACAGCACAGAAACACAAAACAACAACAACAAAAGGGAGAATGGGCAGGAGAATGGCATTATGCAAGAGGAGGCCCAAGCTGAAATACCAGAGACGCCACAGGCCCAAGAGTCGCAGAGGCGGTACAAGTGTGGAATTTGTGTACGCAAGACATACATGTACCTGCATAGTTTGAAGAAACACATGCTGACGCACGTACAGGGCCAGCACTCGTATCCTGTGATATCTTCGGTGCAATCTCTGCAGTTGCAGCAGACGCAGCAACAAATCAACACGCAACAGCCGCAACAGCTCCAAGTTCAAACGATCCAGATACACCCACAACATCAACCCATACAGATTCATGCGGTCGGAGTACAACAAGTGCAACAACAACAACTGCATGTGGCGACATCTACCTGTCAAACGATGCTACCCAACATTTTACAGCTCCAGCCGGCGACGGTGGCGGTTCCGGGTCTTGGCCAACAAGAACTGAGCGGAGTGGCGCACAGGATCATCTTGCAGCCGCAAGCACCGTCGACACATCCCGCCGTCTACACCATACACCACTAA
Protein Sequence: MAAANANKLQNLKFDKICRACLEIKKDMRPLFEQLTATMLMGISKVQVSVGDGLPSQLCLQCVHQISRCHAFKDLVERNDVTLREHARFRAEQALKLKREEEEKLLNLNCPEPAYIHYMEVPMVNNTNQILEGFFNTTPEQTNECKDEQHKENTETEPVEQLPTTKEEEALNSDEENYLQLVVFQATSSVTPGRHVCNLCHKEFKNARFLKQHMKSHSNWIKANCKKPPTCPICDRTFKGPGMLKMHMRTHEERPPKQPTCSVCQRTFTTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYVCSMCNKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCSVCNKGFYEVSKLNAHMRVHTGERPFECQFCERKFAQQSALIYHRRTHTGEKPYSCKLCSARFTTSSARNNHMVTHTGNKRFVCPVCFKGCTSRSELRVHSSKHTGEKLFACSVCAQRFSSASHLAAHRRHHTGEHKYHCAVCGKGYIESNSYKKHMKTHEVKGETEGSTSDNSTETQNNNNKRENGQENGIMQEEAQAEIPETPQAQESQRRYKCGICVRKTYMYLHSLKKHMLTHVQGQHSYPVISSVQSLQLQQTQQQINTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSTCQTMLPNILQLQPATVAVPGLGQQELSGVAHRIILQPQAPSTHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -