Efla017137.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990879.1:6771733-6774072[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3.9e-06 0.00033 21.8 4.2 1 23 8 31 8 31 0.95 2 21 0.033 2.8 9.4 0.9 2 23 37 59 34 59 0.92 3 21 1.1e-05 0.00097 20.3 0.3 2 23 68 90 68 90 0.97 4 21 0.00022 0.019 16.3 1.4 2 23 99 121 98 121 0.94 5 21 2.4e-05 0.002 19.3 2.9 2 23 129 151 129 151 0.97 6 21 5.7e-06 0.00048 21.3 2.4 2 23 159 181 158 181 0.96 7 21 4.8e-06 0.00041 21.5 1.6 1 23 187 210 187 210 0.98 8 21 0.18 16 7.1 0.3 1 23 218 241 218 241 0.91 9 21 0.0015 0.13 13.7 0.8 2 23 253 275 252 275 0.96 10 21 0.00022 0.019 16.3 0.4 3 23 301 322 300 322 0.97 11 21 0.013 1.1 10.8 1.8 2 22 330 350 329 350 0.93 12 21 0.064 5.4 8.5 2.0 2 23 359 381 359 381 0.95 13 21 0.0031 0.26 12.7 6.3 1 23 402 425 402 425 0.97 14 21 3.7e-05 0.0031 18.7 1.3 2 23 432 454 431 454 0.97 15 21 0.00013 0.011 17.1 2.2 2 23 461 483 460 483 0.94 16 21 0.0084 0.71 11.3 2.2 1 23 489 512 489 512 0.97 17 21 0.26 22 6.6 4.8 2 23 520 542 520 542 0.95 18 21 0.0003 0.025 15.9 0.1 1 23 549 572 549 572 0.98 19 21 0.001 0.089 14.2 0.7 1 23 579 601 579 601 0.96 20 21 0.02 1.7 10.2 2.7 3 23 616 637 615 637 0.91 21 21 3.5 2.9e+02 3.1 1.3 1 11 687 697 687 700 0.88
Sequence Information
- Coding Sequence
- ATGTATGAGAATCTACTCGATTTTGTCTGCGATTACTGCAATCGAACATTTACAAGAAAAAATAATTTACGTACACACATAGAGAATTGCCACTTGACTTTCTCTTGCACCTGCGAGATCTGCAAACAGTACTTTGGAAGCCTCGTCGGTTTAAATTTACATTTATCACGAGGACATAATAGAAATAATCAACCATACCCAGAATGCGATATTTGTGGAAGAATATTCAAAAGAAAACAGAATATAGTGTCACACATGATGACTGTACATTACCAGGGTATAACTAAGAAATTACGTTGTAATATTTGCTTTAAGACTTTGACAACGGAACGTAATCTGAAACGACATGTCAATCAGTTACATAATCCTAATATAAAGTATCCTACATGTGATGAATGTCATAAGGTTTTTAAAGGCAAGCATTCATTGATAGCTCATATACAAACCACTCATGGCTTAGAAAAAGGTGTTATAAAGTGTCATCTGTGTGAAAAAGTCTATACAAATAATAGAAATTTGAAAAGACACATAGAAATGTTTCATGGCGAGAAAGGGGAGTTCAAGTGTGTGATTTGCCCCAAAGTGTATACCTCTAATCAAAGTTTAAGAAGGCATAGTCGTACACGACATTATACTGATAGTAAGGAACAATATCAGTGTGATTTTTGCAATCAAATCGTGATTGGACGGGACAATTTAGACAGCCATGTATCCTTCTTTCATAAGGTGGATTATGTTAATGTAAAATCTGAGATTGTATGTGAAACATGTTACTGTAATTTCCCTGATGAGAGCACGTTACGACAGCATATAAAAAGTGTTCATAGCTTTGAGGTATTTTATGATTACTGCAAGAATTCTTTGCTGAAGAAATTTGGGAAAGATTATAAGAATGTGTTGTGTGAATATTGTAATAATTCTTTTGCTAATGTCTATGAATTGAAAGATCATATGAGGTTGACTCATGACAAGAAATATTGTCTATCTACTTGTAATGTCTGCTTTAAGAAGTTTTACAGTAAAGAAACCATGAGGACACATAAAATGACATGTTTACCGCCACCTAACATTAACTCTTGCAGTCATTGTGATAAATTATTCACCATGATATCAAGCTTAGAATTTCATTTAAGAATTTTCCATCCACAAGCTCAATTAGCCGATGCTAATATCACATCAACTATAGTAGATTTTGATGGATCCTATAAATGTAAGCACTGCGACAGAATATACTATAGCGATAGGTCTCTGAGACATCATATTAAACTAAAGCATACAACAGATGAGGCTGTGCAGTGCCAATATTGCTCAAAAGTCTGCAACAATAAATATTACCTTGCATCTCATATTAGAATCGTACACACAAATGATTCTTGGTCGAAATGTGATTATTGTGAAAAGCAGTTTAAATCTAAGCGTAATATTCGAAGGCACATAGAGTACACACATTTGGGTATGCAGAGGTATAAATGCATCGAGTGTGAGACGCTTTTTAAAGAGAAACGTAGTTTACGAAAGCATGTTAGGACAAAACACCCTAACTCAACGTCCTTCCCACAGTGCCATATATGTTATAAAAGATTTGAGTCGGCCAAATCTTGTAAGATACATTTAAAATTACTTCATTCTTTCAACATGAATACATATCCGTGTGACTTATGTTCTGTATCTTTTGGTAGTAATGAGGCATTGAGAATACATTTGAATACAAAACATTTAGCCGAAGATGAGATATATAAATGTGAAGAATGTAATTTAGTATTTAAAGGACAAGAGAAATTCGAGCAGCATAACGAAAGTCATGTTAATCTGTACTCGGACGTAAGACAGAAGGCGTTACCACGCTGTATAATATGCATGAAGGATTTTAGCACAAGGAAAACCTTGAAAAGACATATAAAGAAGTTTCACATGGAATTTGACGTGGAGGAGTTGGCCAACTATGGATCAAGGAAGAGAATGCTTAATGTAGATTGTGAAGAATGCATCAAGAACTTTCAAGATGAATTTTATGTGAATTTATATCAAAAATTGAAACATTTGAAGGATACTGTCATATTTAAATGCGAATTCTGCCATACATCATATAATAAATTGGAATTTTCGATACAAAGATATAGAATGGTGAATGTCGATGTTAATAAAGGCAAAATGATATTGAGTGAATTGTGTACAGCAGAAATGAGTGAGGAGGAGGCTGGTTACAGTGGGTTTGGAAGTCTACATGAGTATATGGAAGGTACTGAATATGTAGAAGCAGAAAGTACGACGAATGATACAAAGGACGTTATACTAGATAATAACATTGTTATTAAGATTGAACCTGAAGAAATCTTGTAA
- Protein Sequence
- MYENLLDFVCDYCNRTFTRKNNLRTHIENCHLTFSCTCEICKQYFGSLVGLNLHLSRGHNRNNQPYPECDICGRIFKRKQNIVSHMMTVHYQGITKKLRCNICFKTLTTERNLKRHVNQLHNPNIKYPTCDECHKVFKGKHSLIAHIQTTHGLEKGVIKCHLCEKVYTNNRNLKRHIEMFHGEKGEFKCVICPKVYTSNQSLRRHSRTRHYTDSKEQYQCDFCNQIVIGRDNLDSHVSFFHKVDYVNVKSEIVCETCYCNFPDESTLRQHIKSVHSFEVFYDYCKNSLLKKFGKDYKNVLCEYCNNSFANVYELKDHMRLTHDKKYCLSTCNVCFKKFYSKETMRTHKMTCLPPPNINSCSHCDKLFTMISSLEFHLRIFHPQAQLADANITSTIVDFDGSYKCKHCDRIYYSDRSLRHHIKLKHTTDEAVQCQYCSKVCNNKYYLASHIRIVHTNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTSFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSNEALRIHLNTKHLAEDEIYKCEECNLVFKGQEKFEQHNESHVNLYSDVRQKALPRCIICMKDFSTRKTLKRHIKKFHMEFDVEELANYGSRKRMLNVDCEECIKNFQDEFYVNLYQKLKHLKDTVIFKCEFCHTSYNKLEFSIQRYRMVNVDVNKGKMILSELCTAEMSEEEAGYSGFGSLHEYMEGTEYVEAESTTNDTKDVILDNNIVIKIEPEEIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -