Basic Information

Insect: Endotricha flammealis
Gene Symbol: -
Assembly: GCA_905163395.1
Location: LR990882.1:6632904-6644952[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.8e-06 0.00015 22.9 0.4 1 23 187 209 187 209 0.98

2 14 0.00022 0.018 16.3 1.4 1 23 215 238 215 238 0.95

3 14 0.57 48 5.6 6.2 1 23 244 266 244 266 0.96

4 14 8.1e-06 0.00068 20.8 1.2 1 23 270 292 270 292 0.98

5 14 0.0001 0.0088 17.3 8.2 1 23 298 320 298 320 0.98

6 14 1.4e-06 0.00012 23.2 0.5 1 23 326 349 326 349 0.95

7 14 3.3e-06 0.00028 22.0 1.2 1 23 355 377 355 377 0.98

8 14 2.6e-05 0.0022 19.2 0.9 1 23 383 405 383 405 0.98

9 14 0.00022 0.018 16.3 1.1 1 23 411 433 411 433 0.98

10 14 4.4e-07 3.7e-05 24.8 2.0 1 23 439 461 439 461 0.98

11 14 2.9e-06 0.00024 22.2 3.4 1 23 467 489 467 489 0.98

12 14 0.078 6.6 8.3 2.9 1 23 495 514 495 514 0.95

13 14 6.5e-07 5.5e-05 24.3 0.5 1 23 520 542 520 542 0.98

14 14 0.0012 0.1 14.0 3.2 1 22 548 569 548 569 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.8e-06	0.00015	22.9	0.4	1	23	187	209	187	209	0.98
2	14	0.00022	0.018	16.3	1.4	1	23	215	238	215	238	0.95
3	14	0.57	48	5.6	6.2	1	23	244	266	244	266	0.96
4	14	8.1e-06	0.00068	20.8	1.2	1	23	270	292	270	292	0.98
5	14	0.0001	0.0088	17.3	8.2	1	23	298	320	298	320	0.98
6	14	1.4e-06	0.00012	23.2	0.5	1	23	326	349	326	349	0.95
7	14	3.3e-06	0.00028	22.0	1.2	1	23	355	377	355	377	0.98
8	14	2.6e-05	0.0022	19.2	0.9	1	23	383	405	383	405	0.98
9	14	0.00022	0.018	16.3	1.1	1	23	411	433	411	433	0.98
10	14	4.4e-07	3.7e-05	24.8	2.0	1	23	439	461	439	461	0.98
11	14	2.9e-06	0.00024	22.2	3.4	1	23	467	489	467	489	0.98
12	14	0.078	6.6	8.3	2.9	1	23	495	514	495	514	0.95
13	14	6.5e-07	5.5e-05	24.3	0.5	1	23	520	542	520	542	0.98
14	14	0.0012	0.1	14.0	3.2	1	22	548	569	548	569	0.94

Sequence Information

Coding Sequence: ATGTCGGACATGTGTATAGCGAGCGGCCTGTGCCGTTGCTGCCATGCAGAGGGTAACTTCAAAAGTTTGGGAGCGAGTTATCAAGATGAAGGAGTTGAAGAAATTTATTCCATCATGTTGCGAGATACTTTCGACATTATTATGTCTCCAGCTACGGACAACTCTCCGTCTGCGTACAGCATCTGTGAGCTATGCGTGCCACGGCTGAGGGATGCCACACTCTTCAAGCAACAAGTCAAAGCTTGCGAAATGAAGTTCCTCCAATATTACACCAGCTCTAGCTTTAAAGATGCAGTTCTCACGGACAGAACTGTTAAATTGGAGTTCGACAGTTATATAGATGGACCGAAGGATGAAATAAATGAAGGTGGTGCCACAGTTAAAGATGACGATGACGCAACGTTAGATGCCTTCGGTGAATCAGTATTGGACATGGAGGACCAGCCTCTGTCCACCTTCAAGACACGAAGCTCGCCTGGATCGAACTTCGACCATGAAGATTGGACGGATCCTGAATTAAGTTTAGATGTGAAAAAAACACATAAAAAAGTGAAAAAGTATTCGTGTAATGTGTGCGACAAGAAGTTTTCATACCTCGGCTCGTTAGAGGTCCACTTGAAAGTACACAGCGGCGAGAAAACATACCAGTGTTACCTCTGCAACAGTAAATACACACAAAACAAAAACCTAACGAAACACATAGAGGAAGTACACAGCGTAAACGACAAATACCACTGCAACGTCTGTAATACAACATTCGAACACACGAGAATATTCAAAAAACACATAACGCAACACTACGAGAAATTCAAATGTGGAACGTGCGACAAGGAGTTCCAAAGGAAGAAAGGTCTCAAGGAACACATAAAAATACATAGCGGCGAAAAGAAACATAAGTGTCATTTGTGCAATAAGTCTTTCGTACACAGTCAGACTTTAAAATCGCATCTGTTGACGCACAGCGGGGAGAGGCCTTATGTTTGTGACGTATGCGGAAGGAGATTCCCACAAAGAACACATTTGATAAGACACATATTTATTATACATAGAGGAGCGAAACCGTATTCATGTAATATATGCCAAAAACAGTTTTCAAGTAAGAGTTATCTTGCGATACACGAGAGACAGCATACGGGCGAGAGGCCTTTTTCTTGCGACGTCTGCAAGAAAGATTTCACTGCGTACACGACTCTAAAGGTGCATATGAGGGTGCATACTGGACTGAAGCCTTACAGTTGTGGATTCTGTGATAGGAGGTTTGCTCAGATGGCCAGCTTCAAGCTGCACGAGAGGACCCACACGGGCGAGAGGCCTTACTCGTGTGATGTATGCAAAAAACACTTCTCAGACAACGGATATTTGAAGATACACATGCGTGTTCACACAGGCGAGAAACCTTATTCGTGCGAGGTGTGCAAGCGGTGTTTCCGAGAAACGGGCCAACTGAAGAGGCATATGCGCATACACACGGGCGTCAAGCCCTACACATGCAAGATATGCAACAAACAAATAGGTAATCTATCGAAACACATGCGAGTGCACTCCGACGTTAGACCGTACAGTTGCGAGATTTGCAACAAGCAGTTCTCTATAAACGGGAACTTGAAACTACATATGCGCATACACAGCGGGGAGAAACCTTTCGCTTGTGAGTACTGCCACGGACAGTTCACGCAGAGCAGCGGCCTGAAGAGGCACCGGTGTACGCAGTTGGGGAAAACGGACATATAA
Protein Sequence: MSDMCIASGLCRCCHAEGNFKSLGASYQDEGVEEIYSIMLRDTFDIIMSPATDNSPSAYSICELCVPRLRDATLFKQQVKACEMKFLQYYTSSSFKDAVLTDRTVKLEFDSYIDGPKDEINEGGATVKDDDDATLDAFGESVLDMEDQPLSTFKTRSSPGSNFDHEDWTDPELSLDVKKTHKKVKKYSCNVCDKKFSYLGSLEVHLKVHSGEKTYQCYLCNSKYTQNKNLTKHIEEVHSVNDKYHCNVCNTTFEHTRIFKKHITQHYEKFKCGTCDKEFQRKKGLKEHIKIHSGEKKHKCHLCNKSFVHSQTLKSHLLTHSGERPYVCDVCGRRFPQRTHLIRHIFIIHRGAKPYSCNICQKQFSSKSYLAIHERQHTGERPFSCDVCKKDFTAYTTLKVHMRVHTGLKPYSCGFCDRRFAQMASFKLHERTHTGERPYSCDVCKKHFSDNGYLKIHMRVHTGEKPYSCEVCKRCFRETGQLKRHMRIHTGVKPYTCKICNKQIGNLSKHMRVHSDVRPYSCEICNKQFSINGNLKLHMRIHSGEKPFACEYCHGQFTQSSGLKRHRCTQLGKTDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -