Ecoc044052.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294069.1:174459346-174465116[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.1 2.2e+03 1.2 0.9 1 21 10 30 10 31 0.91 2 11 0.022 5.1 9.4 2.1 1 21 539 559 539 563 0.90 3 11 0.86 2e+02 4.4 0.2 1 22 574 595 574 598 0.90 4 11 0.0052 1.2 11.4 0.7 2 23 620 643 619 643 0.90 5 11 2.3 5.5e+02 3.1 2.3 2 23 656 678 655 678 0.89 6 11 0.1 24 7.3 1.3 1 22 683 704 683 707 0.87 7 11 0.089 21 7.5 0.7 2 23 726 748 725 748 0.96 8 11 0.00016 0.039 16.1 0.1 2 22 754 774 754 774 0.96 9 11 0.00039 0.093 14.9 1.8 1 23 831 852 831 852 0.97 10 11 0.00029 0.069 15.3 0.4 1 23 858 880 858 880 0.96 11 11 2 4.6e+02 3.3 0.7 1 12 899 910 899 911 0.85
Sequence Information
- Coding Sequence
- ATGGAAGATTTCGACGACGATGATACTCACTTTTGCTTAAAATGCCACTTGGCAATAACCGGACTAGGAAACTATATAACTCACCGCAAAAACAGTTGCTCGAAAACTGTAATCAATCGGATCGTTTCTCCGTTGCCTAGCCAATTACTTCCTCCTGACGAATCATTCAGCTTAAAAGCAGACGATTTTTTCTCCTCCTTGGAACTACAAAGCAGTTCCAAAAAACCTCCACAACAATCGACGGGTGGTAAACATTTCAGCCGAATTTTAACGAGAAGCAAAACGACCGGAACGGTACATGCGGCGAAAGAACATTTGGAACCTTCGAAATCGGGTAAAAACGTCTGGATAGGAGGCCATCAACTTAAAGAACTCGGCTGTGGAGATAACCAATCTAAATTGATCAAAGCCGTGGACAATTTAGAACGTAGAAAAGAAGACATCACTCGTAGGAAAGAAGAAATAGAGCGACTGGCCGTTTACGAAGAAAGCGAAGACGAATCGGACGACTCCGATTACGACGACGAAACGTCAGATGAAGATGCCCCGCCGCGAAACCACACTGGCGGGAAGTGGAAACCGTCTTCACCtatttattggaaaaatagTCAGAACGAAAGAGATTGGAGAGTCCCGCCTCCGTCTTATACAGGAGGAAAATGGAAACCTTCTCCTTCGAAACAAAATTCTTCGCCACCACCTCCTCACGCCAAAAGCAAAGCAAAACTCGAGTATGTACATAAAGAAGGTGGCGATGCGCCACCATCATGTTTCACCGGAAGCAAATGGAGTCAGAGCAAAAAACACGAATTTGAAGTTCCACCAACGAATTACACCAAAGGAAAGTGGAAACCAAAAAATGAAGAAGATTTTCCTCCTCCCGATCATACGAAAGGCAAATGGAAGCCCAAAAACGAAGAATATTTAACTACCCCGCCATCGGACCACACCAAAGGCAAATGGAAACCATTGGAGAGTGAAGAAACTGAATCTTCATCGTACAAGGAGTCCCTTCCGGATAAGGACAAAACGAAAACTGTATCAGTCAACATCATATCTGCTTTCCTCAAAGGAAAATGGAAAACACCAAGTTCTGATGGAACCGTAGATAGCAAAGACATTACTACTACTAACTACACCAAATGTAGATTGTCGCctgtcccaaaaaactgtcacgaAGACCAAGTGGACTTGAAGATAATCGATAGTTCGCCTTTTATGAAGTCTTCCGGAGCTGTCCAATATTGGTGTAGGCCTTGCAACAGACACCTCGCTTCCAAAATCGTGTACGAACGACATTTGAAGTCCGAAATGCATTACAAACGAGCGTATCAGGAAATCGAATTCGAAGATGGTTTGATGTTCGTAGACGACAAAGCGAAAGTGGCGAGACGTAAAACGACACAGAGTTTGATTCCGAAGAGTACTGTCGCGAAAAAACGTACCCGCCGGAAGGTATTCGAAAAATGTCAGGTTTGCAATGCGAAAGTCAATATGAATTTGATCGGTAAACATCTGATATCTCATTATCACTGTAGGAAAGGCAATATAACCACATTGGAAGCCCAACAAATGGTGCTAGATAATATTTTAGGGATAATTCTTCAGAGCCCGTTCCAATGTGGGATCTGTAAATTCTATTTCAACAGTCAAAgaaattttttggaacattgGACCTCTAAAACTCACTTCGATAAACAGGTTGCCAAGCCTGGAAAGTTTGTATGCAGTTTCTGTAAAGTCACAGCCAACGATAATGATGAAATGTATGAGCACCTATTGTCGCAAGAGCACAATGAAGTAGTATCAGTTATAAACAGATCGGTACCTATAGTCATTAAGAAAATCAGCTATTCTAAATGTGGAACTTGTGATGAATCCTTCCCTTTGAATGTTCAATTGTTGAAGCATACGCAGAAACAGAAACATCTATTACCGAGAGATCTGGTATTAGACTATATACATAACTGTATCAAATGCGACAATTCTTTGAAAACTGGCGTATCTTTGCAGAGACATTACAAAAATCAACACAAGCAACACACTTTCATCTGTACAACCTGTAACATGTCCTTTACCACAGTGAGAGATTCCAAGTTACACAGAAGGAGCGAACAACATTATTACGCAACCTTGGCTAAGAAGAGCATGGTCGACGGAAGAAACTTGCAGAAGAAATGCCAGTATTGTCCGGATGTTTTTGAGAATTTCTTGAAATTGAAAGAACATTTGAACGTCAAACACGTCGAATTCAAACCAAGATGTCCTCATTGCGGCATGATTTTCACCGTTCCACAAGAACTATCGGTCCATCTGAGAACGAAATCCTGCAAAATAGTAAAGAAAGAAACCCAAAATTCGTGCGAACAATGTTTCTTCTCAAGCGAATCCGCTTCCGAACTGATGTTCCACAAGATCTTGCATACCAAGCCTTTGCTGATATACCCAGAGAACGTTGCCGAAGGCTCTGACAAGAAACCCATACCGCAGTACGAATGTCCGGAATGCGGCAAGTTCTTTGTGAAATCTTCCCTGCAATGTCATCTCAGAATACACACGAAAGAGAGACCGTTCAGTTGCGACGAATGCGGGGCCAGTTTCGTCAGAAAAAGCAACTGGATTTTTCATGTGAAGAAACACAAAACTGGGAAGGCTGTCGTGCAGAAAAAAGTGGTATGCGAAGGTGAAAGACCGTTTCTGTGTTCTACTTGTGGGGCCAGTTTTAGAAAGAAGTAA
- Protein Sequence
- MEDFDDDDTHFCLKCHLAITGLGNYITHRKNSCSKTVINRIVSPLPSQLLPPDESFSLKADDFFSSLELQSSSKKPPQQSTGGKHFSRILTRSKTTGTVHAAKEHLEPSKSGKNVWIGGHQLKELGCGDNQSKLIKAVDNLERRKEDITRRKEEIERLAVYEESEDESDDSDYDDETSDEDAPPRNHTGGKWKPSSPIYWKNSQNERDWRVPPPSYTGGKWKPSPSKQNSSPPPPHAKSKAKLEYVHKEGGDAPPSCFTGSKWSQSKKHEFEVPPTNYTKGKWKPKNEEDFPPPDHTKGKWKPKNEEYLTTPPSDHTKGKWKPLESEETESSSYKESLPDKDKTKTVSVNIISAFLKGKWKTPSSDGTVDSKDITTTNYTKCRLSPVPKNCHEDQVDLKIIDSSPFMKSSGAVQYWCRPCNRHLASKIVYERHLKSEMHYKRAYQEIEFEDGLMFVDDKAKVARRKTTQSLIPKSTVAKKRTRRKVFEKCQVCNAKVNMNLIGKHLISHYHCRKGNITTLEAQQMVLDNILGIILQSPFQCGICKFYFNSQRNFLEHWTSKTHFDKQVAKPGKFVCSFCKVTANDNDEMYEHLLSQEHNEVVSVINRSVPIVIKKISYSKCGTCDESFPLNVQLLKHTQKQKHLLPRDLVLDYIHNCIKCDNSLKTGVSLQRHYKNQHKQHTFICTTCNMSFTTVRDSKLHRRSEQHYYATLAKKSMVDGRNLQKKCQYCPDVFENFLKLKEHLNVKHVEFKPRCPHCGMIFTVPQELSVHLRTKSCKIVKKETQNSCEQCFFSSESASELMFHKILHTKPLLIYPENVAEGSDKKPIPQYECPECGKFFVKSSLQCHLRIHTKERPFSCDECGASFVRKSNWIFHVKKHKTGKAVVQKKVVCEGERPFLCSTCGASFRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -