Basic Information

Insect: Endomychus coccineus
Gene Symbol: -
Assembly: GCA_958510875.1
Location: OY294071.1:35327168-35330320[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00048 0.11 14.6 0.0 2 23 86 108 85 108 0.94

2 11 0.01 2.4 10.5 4.6 2 23 194 216 194 216 0.91

3 11 7.2 1.7e+03 1.5 7.4 3 23 383 404 382 404 0.86

4 11 2.8 6.5e+02 2.8 0.2 3 15 455 467 455 476 0.79

5 11 0.0013 0.31 13.3 1.0 2 23 538 560 537 560 0.95

6 11 0.015 3.5 10.0 0.2 2 23 585 607 584 607 0.93

7 11 0.0079 1.9 10.8 3.7 2 23 656 678 655 678 0.96

8 11 0.11 26 7.2 3.7 3 23 693 714 691 714 0.92

9 11 0.00021 0.051 15.8 0.7 2 23 764 786 764 786 0.95

10 11 0.019 4.5 9.6 0.2 1 23 857 879 857 879 0.98

11 11 0.012 2.9 10.2 1.7 2 23 891 913 890 913 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00048	0.11	14.6	0.0	2	23	86	108	85	108	0.94
2	11	0.01	2.4	10.5	4.6	2	23	194	216	194	216	0.91
3	11	7.2	1.7e+03	1.5	7.4	3	23	383	404	382	404	0.86
4	11	2.8	6.5e+02	2.8	0.2	3	15	455	467	455	476	0.79
5	11	0.0013	0.31	13.3	1.0	2	23	538	560	537	560	0.95
6	11	0.015	3.5	10.0	0.2	2	23	585	607	584	607	0.93
7	11	0.0079	1.9	10.8	3.7	2	23	656	678	655	678	0.96
8	11	0.11	26	7.2	3.7	3	23	693	714	691	714	0.92
9	11	0.00021	0.051	15.8	0.7	2	23	764	786	764	786	0.95
10	11	0.019	4.5	9.6	0.2	1	23	857	879	857	879	0.98
11	11	0.012	2.9	10.2	1.7	2	23	891	913	890	913	0.91

Sequence Information

Coding Sequence: AtgatgacatctgtcacgttaCCTTCTACTTCTGGTCCTATACATCAGGGATTCTCCTCAGTAGCAGAAGAAACTACAAGCAGCGAGCCCGATTTCGAGCAGTCTCGTCCGATAAAACGCTGCTTAACTACATCTCATGCAGACTCGTGCAAAAAGCGAAGGAAACAGTCAACTCCCATCCGTATTTCCGCTGCCGAATCGGAACCCGTGATCCCAGAAGGTAAGCCATCTGCGACCACTCCTGAGCCTGATCTGCAGTGCCCCGTGTGCCAACTTTACTTCGACAATGCAGATCAGCTTCAATCGCATATCGTTTCGGTCCATTCATCTTTCGAATGCAAAAAGGAACCGCTCGAAGAACAACTCCATCAGCAACAATCATTCTACGAGCGATCTGGAACCCCACATGAATTTACATTTCCCCGACCTGATATGCATTTAATGAATGAAATCCAGAGTAAGGAATGGATGACTCGTTTACCTTTTAATCCTAATAATACAGTTTTCATGCCATTACCTCAATTCTCACAATCTGAAAACTTACAAAGGCAACCAATTCGAATATTTAATCCTGATGCTTATTGCGATTTATGTAACAaagaattttgcaataagtaCTTTTTAAAAACGCATAAAGCAAATAAACATGGAATATATACAGACCCCCCTATATGTGAATCTATGCCAAATTCAGTAACTATTCCATCTTACGCTGCAAATGTGAAACTAACTACTTCAGTGCCAAGTGTTGAAATACCACCTGTTAAATCAGAACTTCGAACTTCTGCTATTGTTAATCCATTTAGTGACATTTTCCCGAATCCTTTTTCACATAAACTCCTGTCGAAATTACACCAAACTAATCAAGGTAATCCAAATGAGAATGATAGTAATGACAAGGCCCCATCCACAAACGGATTCTCTTCTAACGGCGAAAGTGATAAAACTTTGACAGATGATCCCCTCAATGACGAGTCTTCTAGTCCCagaacaatacaaaacgaatcTACCTCATACAAAAGTGATCAAGACGCTTTATATTATGTTCCTACAAGTAAACTGTCCCCTGGTCAGATTAGTCTTAGTCGAGAATTCGACCTGTCAAACCGTTTAAGAAAAATTGGAGTGATGAATCCTAAAGCTTTCTGTGAAATCTGTTGCAAAGAATAttgcaataaatattttttgcgAACTCACAAACTGAAACGACACGGTATATACATTCCAGACGACAAAGATATGAAAATGGAAGGTATTGGATGCTCACCTTGGCCCCAGAGCATGCAAACAAGTCCTTTGAATCTCATCATGACTGAACAATCCACTTTAGACCGAAAAACAACTTCCCCAGCTGATATCGGTTGTGATACTTGTggtataaaatttcaaaatgctaGTTTGTCTCAATTGCACAACGTTAGCGTACATTCTAAGTTATATAGTAAGGAATCTGAAAGCACTGAACAGATTTCTGAAGAGAGCAAGAAAACGACTGATATTTCAAATACTGGTGAAAAGTCTTTGAATGCGGAAGCAATTAGTGAAGATTTGCAAAAACTCCAAACCATGATTCTTCAGCTAAATGATTTAGGTGTTAGTAAAATTCCAATCACTTGTAGTGCGTGTaataaagaatttgaaaatcgATATTTCTTGCATGCCCATATGTTGTCTGAACACGGAATTTTATTAGATGATATGACTGAAATGGAGAAACCAGCTGAGTCCGACAACAGTTCCAACAACAACACCATGTGTGATTTGTGCGGTAAAGATATACAAAACGTCGATGAACTGAAGAAACATATGCTGGATTTTCACCCCAATCATCAACTTGGTGGTGAGTCTATCAAGGATGAATATAATTTGATGACTACTCCTGAGAAGGGAATAAACAGGGTTTCACTTTCAGCTGCTCAAATAGCTGAACGGCGAATATCTATAAGTCTTACGCCCACCAGCAGCTATTGTGACATCTGTAACAAAGAATTATGtaacaaatatttcatgaaaACGCACATGCAGAGAATGCACGGTATAGAAATTGAAAATGGAGCACAAATAGGAGGTGTCATATGTGATATCTGTAATAAAGAATTATGCAGTAAATATTTTCTAAGAGTTCACAAACATAATACACACGGGATTGTAGAATATGGAGCAAGTCTCCTTCAGCCCAGAAAATCAGAAGGTGACACCATACCTACATTATCTCTGGAACCGGACCCGGCATTGAAGCCTGTCGACCTGGCAGACTTGAGTCACAGATATTTTACCCATTTTACAGAAGTTTGCACCATATGTAGTAGACGTTTTAGAAGTACCAAATGGCTGAAAGCTCACTTATTGAGTGATCATGGTCAAGCAGGCGCCGAAAAATGGGCTGAACTGGAACAAAAATTTTCGCAAACCATCGGACAACATTCAAAAATCATTGCTCAGACCAAACTTGAACAAACTAGTCCAACTTTGAAAATCCCCAATGGCAATCAGGATAATCAACCTAAAGTCGGAATACAAAATGTCCTCTCTAATTTATTTGGTGTAGATGAACCGAATCCAAAAACGTATCAATGCTCTGTATGTCCTTTTACCACTACATTGTTGCCACTCTTATTCGTACACGAGCGCTCCCATTCTTTAACAGCGGAACTTGAAAATAATCCCATAAAATGTCCCGTGTGCAATCAGACTTTTCTCAAAACCGAATTATTGCAACACCACATGTTTAGTCAACATCCATTTCTTCCGTTACCCCCGTTCTTCAACGGATGCAATGAAAATCAAACAGACTCTAAGGAAACATCGGAGTCGACAGATGAGGAGGGTAAAGCTGAAGAAGCTAATACTTCAAATGGAAGCGTGAAAGGAACCACGCCTAAAAAGAACAAGTACAAAACAAGGAAAGAATTATCACCTGAGATGGGTCAATGCATGAAAGACGTGGCAAAAAAGACCCAAATGCCGACAACATACGCATTGCCGCAAGGTCCGGCCGGAGAGGAACTACCACCATCTAGTTATTTCATGCAAGCATTTCTATTGGAGGAAGTGGCTTCTGAGCGACGCGTAGTTCCCGCCGTCGTGTTCTTACCTGTGCTCCAGAAGCAACCTACCCCCATTTCGATGACGTTTACTCTCACCCCGGCCTAA
Protein Sequence: MMTSVTLPSTSGPIHQGFSSVAEETTSSEPDFEQSRPIKRCLTTSHADSCKKRRKQSTPIRISAAESEPVIPEGKPSATTPEPDLQCPVCQLYFDNADQLQSHIVSVHSSFECKKEPLEEQLHQQQSFYERSGTPHEFTFPRPDMHLMNEIQSKEWMTRLPFNPNNTVFMPLPQFSQSENLQRQPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYTDPPICESMPNSVTIPSYAANVKLTTSVPSVEIPPVKSELRTSAIVNPFSDIFPNPFSHKLLSKLHQTNQGNPNENDSNDKAPSTNGFSSNGESDKTLTDDPLNDESSSPRTIQNESTSYKSDQDALYYVPTSKLSPGQISLSREFDLSNRLRKIGVMNPKAFCEICCKEYCNKYFLRTHKLKRHGIYIPDDKDMKMEGIGCSPWPQSMQTSPLNLIMTEQSTLDRKTTSPADIGCDTCGIKFQNASLSQLHNVSVHSKLYSKESESTEQISEESKKTTDISNTGEKSLNAEAISEDLQKLQTMILQLNDLGVSKIPITCSACNKEFENRYFLHAHMLSEHGILLDDMTEMEKPAESDNSSNNNTMCDLCGKDIQNVDELKKHMLDFHPNHQLGGESIKDEYNLMTTPEKGINRVSLSAAQIAERRISISLTPTSSYCDICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKHNTHGIVEYGASLLQPRKSEGDTIPTLSLEPDPALKPVDLADLSHRYFTHFTEVCTICSRRFRSTKWLKAHLLSDHGQAGAEKWAELEQKFSQTIGQHSKIIAQTKLEQTSPTLKIPNGNQDNQPKVGIQNVLSNLFGVDEPNPKTYQCSVCPFTTTLLPLLFVHERSHSLTAELENNPIKCPVCNQTFLKTELLQHHMFSQHPFLPLPPFFNGCNENQTDSKETSESTDEEGKAEEANTSNGSVKGTTPKKNKYKTRKELSPEMGQCMKDVAKKTQMPTTYALPQGPAGEELPPSSYFMQAFLLEEVASERRVVPAVVFLPVLQKQPTPISMTFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -