Ecoc019902.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294067.1:293712030-293714066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.73 1.7e+02 4.6 3.8 1 23 396 418 396 418 0.96 2 10 0.027 6.4 9.1 2.3 1 23 423 445 423 445 0.95 3 10 7.5e-06 0.0018 20.3 2.5 1 20 456 475 456 477 0.92 4 10 1.5e-05 0.0035 19.4 3.1 1 23 484 509 484 509 0.96 5 10 0.00019 0.045 15.9 0.2 3 23 517 537 516 537 0.98 6 10 0.00017 0.039 16.1 4.8 1 23 543 565 543 565 0.97 7 10 0.0016 0.38 13.0 0.6 1 23 571 593 571 593 0.97 8 10 0.0036 0.86 11.9 1.3 3 23 601 621 599 621 0.96 9 10 0.079 19 7.7 1.2 2 23 629 648 629 648 0.73 10 10 0.0023 0.54 12.5 4.4 1 23 654 677 654 677 0.97
Sequence Information
- Coding Sequence
- ATGAACAATAAAACTTATGTCGATAATCTGTATGCCTTTACTGCCCGCTCAGATTACTCTAAGCAAAATCATGCACAAGAAATACCTACTCAGATCTATACATTTTATCCAAATCAGAATGTAGCAAACAGTCAAGACTCATCTAATTTAATTagaaataagaataacatatatcCTAATACATCTGAAGTGCCATATTTTGATAACCGTTTGGGAGAGGGTGAGAAGAACTTCAGAAAACTAACTGATAGATcagaaatgattgaaatttcaGCAAAGGATTTGAGTCCGGCTAGTTTATGCAGTAATCTTGATATGTTTGGTACGGATTTCTTCAAAACCATTTCAAAAGACATTGCTTATTACAACAAATATGAGAGTCAGTGGTattcttcaaatttcaatttgaagaaCGATTTACCATCATGTGCAcaggtaaatcaaagttttgATATTGATCAAAATGGCAAATACTGCAGCATCCAGAAAAATCAAGAAGTTGAAACTGCTAATAAAAGTTATCTGTCTGGTCACAATTATTTATATTCTGAAACTAATCAAATTTCCCTTAAAAATGCTGATAAACAACAATTCAATGATTCTGTCTTGAATGATTGTAGTTACTACAATTATTATGAAGTTAGGCAGGTAGATTCAAGTAATATTCAAAATGCTTGTTTTGGCTTGAATACTGATGTTACACTTATTCCCAATAGTTTGCCATTTGAAAGTATTACTGCCACAGATCAACAAACGGAATGTTCAAATGAAGAAAGTGATATAATAGTAGAAGATTCTGACGAAGATATTAATACTGATTGCAGTGAAGATCAGGAGagaaaaatgcattatttgagTAATAAATGCATGATATGTAACCAGTCATACATTCCAATTGGGTTGCAGTTTTATTGCCTAACATTGGACAGTCCAGTAACAATGACATCACAGAAGCCAGTATTTGAAGAAATCAAGAAGATTTTGGGCAGTATTTCTACTACGTGTAATTATTTGTGCAGTGAATGTTTAGGTCTTGTTAATTCTATTGATCATTTGCAGTTGAAGCTAGAGAGTTTTAGAAATGAACTAAAAAATAAGTTTTCAAAAACTTGcgatttaaataatataattgttgataaaaGTTTTCCAGTGAAAAGTACTAGAATTATTAAACAAATACCAAAATATCGATGCAAATACTGTAAAATGGTACTATCACTAAAACAATACTgtgaaaatcatataaaagaACACAAACGAAAAAAGTTCCTCTGTGATATTTGTGGAAGATTATGTCAGAATAGTGTTAAATTTTCTAAACATATTAAATTGCACGGTtctaaaaatatccccaaaatgAATTCGTATCTATGCTCGAATTGTGATAAAACATTTAGGACAAGATCAAATCTGAAAGAACACCAACATTATTGTTTAGGAACTCTACCATATAAGTGTAAAAATCAATATTGTGATAAGAAATTTGCTTCTTCATCCAAATTAAAGAATCATGTAAAACTTAAACATGATAAAAAATTCATTGCTATCTGCTCCATTTGTAACATTGGTTTCATCAAGCTGTCCGATTATAAATCACACATGATCACTCATAGCACAGAGAAGAAACACGAATGCAAGAAATGTGATAAAAGTTATAAAACCCTAAGCAATCTAAATTTCCACTTGAAAAGTCATGAAAAGAATCTTCCTTTCAATTGTACTATTTGTGCAAAAGGTTTTTTGAGGAAAGAATATTTCGAAGCTCACATGAACAACCACAACGGAATAAAAAGTTTCGGTTGCTctatatgtttgaaaaaatttgtatcTCAAAAAAATCTGGATTCCCATTCGAAATACCATGATGGCAGTATTAAAAAGAGAACATGCAATATTTGTGGGAAATCTTTAACAACAAGTTTTCAAgaacacttacgaattcataaCAATTTAAAAGAATTTGAATGTCATTTATGTGAATCCAAATTCAACACTAAAGGAACTTTAGCTAAGCACAAAAAGAAGAAACATAAATGA
- Protein Sequence
- MNNKTYVDNLYAFTARSDYSKQNHAQEIPTQIYTFYPNQNVANSQDSSNLIRNKNNIYPNTSEVPYFDNRLGEGEKNFRKLTDRSEMIEISAKDLSPASLCSNLDMFGTDFFKTISKDIAYYNKYESQWYSSNFNLKNDLPSCAQVNQSFDIDQNGKYCSIQKNQEVETANKSYLSGHNYLYSETNQISLKNADKQQFNDSVLNDCSYYNYYEVRQVDSSNIQNACFGLNTDVTLIPNSLPFESITATDQQTECSNEESDIIVEDSDEDINTDCSEDQERKMHYLSNKCMICNQSYIPIGLQFYCLTLDSPVTMTSQKPVFEEIKKILGSISTTCNYLCSECLGLVNSIDHLQLKLESFRNELKNKFSKTCDLNNIIVDKSFPVKSTRIIKQIPKYRCKYCKMVLSLKQYCENHIKEHKRKKFLCDICGRLCQNSVKFSKHIKLHGSKNIPKMNSYLCSNCDKTFRTRSNLKEHQHYCLGTLPYKCKNQYCDKKFASSSKLKNHVKLKHDKKFIAICSICNIGFIKLSDYKSHMITHSTEKKHECKKCDKSYKTLSNLNFHLKSHEKNLPFNCTICAKGFLRKEYFEAHMNNHNGIKSFGCSICLKKFVSQKNLDSHSKYHDGSIKKRTCNICGKSLTTSFQEHLRIHNNLKEFECHLCESKFNTKGTLAKHKKKKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -