Ecoc045619.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294070.1:18684657-18691649[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00027 0.064 15.4 2.2 1 23 137 160 137 160 0.96 2 13 0.018 4.2 9.7 5.6 1 23 166 189 166 193 0.97 3 13 0.0018 0.43 12.8 0.9 1 23 195 218 195 218 0.96 4 13 0.0017 0.41 12.9 1.2 1 23 224 247 224 247 0.97 5 13 0.00014 0.033 16.4 0.6 1 23 253 276 253 276 0.97 6 13 0.014 3.4 10.0 0.2 1 20 282 301 282 305 0.92 7 13 0.024 5.6 9.3 6.9 1 23 311 334 311 334 0.97 8 13 0.15 35 6.8 3.0 1 19 340 360 340 365 0.90 9 13 0.00083 0.2 13.9 1.1 2 23 372 394 372 394 0.97 10 13 0.002 0.48 12.7 2.9 1 23 400 423 400 423 0.95 11 13 0.0003 0.072 15.3 0.3 1 23 429 452 429 452 0.96 12 13 0.0017 0.39 13.0 0.2 1 23 458 481 458 481 0.97 13 13 0.044 10 8.5 0.6 1 23 487 510 487 510 0.91
Sequence Information
- Coding Sequence
- ATGAAACTTGAATGTTCCGACAGTGATGTGTTCCCATTTGTTAAAGTAGACATGTTGCCCACACACTTTAATGAAAATGAGAATGATGAAACAATGATTTCAGATCCACTATTTCAGTCAATTAGTCCTAATACTGACTTATATTGTGAATCAGATGGTCCACAAGTTAGAAAGAAACAGAAGAAGTCTTCAGTTGGGATATTTGTTCCTGTTAGAATTAAATCAGAGGAAGATTTTGAAAACTCTCCAATAAATAGAAAACAATCTCCTTTCAGAGACTTAAGTTCCAAGCCAACAAACACTACATTCTTGAAGAAGTTTTATTCCTGTCAAAAATGTGAATATTTAGCAGAGAGTCGAGAAGATCTAAGGTTTCACTTAACAGATACTCACCCAAAAACCAAATTATTCCCTTGCTCTAAATGTGATCACATAGCCACCAGGGCAGCTCATCTAAAACGACACATTAACAACCGGCATACAAGAAGTGATGTTCATCAGTGTACATTTTGTGATTATAGTGCTACAGAGTTACATAACCTAAAAGATCACATAAACAGTAAGCATACTAGGACACATTTGTACCCATGCAAATTGTGTTCTTATGTGGCAACGAGATCTACTCATCTGGACAGACATGTCAATAACATCCACACTCGAAATGTGACGTATCCTTGTGAATTATGTGATTATTCAAGCACCGAAATAGATTGCCTCAAAAAGCATATCAATAGTAAGCACACTCGAAGCAAGTTGTATGCTTGTTCTCATTGTAACTATGAAGCTACACAAAATAGCACTTTGAACGTCCACATCAACAGCATCCATACAAAAGAGAAATTGTATCCATGTGAATTATGTAGTTACAAGGCTACAGAGTCTGGTAGTttgaaaaaacacatgtggACTGTACATACTCTTGGCAGCGATCACAAATGTCACCTGTGCAATTTTCAAACTAAACAACGCAAAGATTATAATAAACATTTGCAAATGGTACACCCAGGTGAATTAGTTCATAGGTGCAAACAACCGGATTGTGATTACTCAACGGCGAAAGCTGCGACGTTAAGGAAGCATTGCAGCGTCAAACACAACTTGGCTAATTTTCGTAAATGCCTATATTGTTCTTACACTTCGGCCCAACAGAACTCGCTCGAAAACCACATGAACAGTAAGCACAGACATCTGCGTCCTCACGCGTGTCACCTGTGCGACTTCACTGCCACGCAGCTCGGTACCTTGAAACGCCACATCAACAGTAAACATACCAAAGAGAAATTGTACCGTTGCACCGAGTGCGAATACGTCGCCACACAACCTGACACGTTAAAATCCCACGTCAATAATCGTCACACGAACGTTAAACCGTATATCTGCCAATATTGTGGTTATGCGGCCGCGAAGCTGAGTTATCTTTACATTCACATCAATAGTAAACACACGAGAAGCAAGTTGTTTCCTTGTAAGTTCTGTAAGTATAGTGGTACGACCAAGGCGGctatcaataaacatgtgacGGCGAAACATAAATCGCAAATCAAAGGATATCTAGCCAGCCTTTGTGAAAGTTTTAGTGAAAAAATCGAAGAAGATGATTGTGATGGTGATTTAAGTGATCGGACAGTAGATATCTGTGAAGTTAAAATAATACAATCCTGTGAGTGA
- Protein Sequence
- MKLECSDSDVFPFVKVDMLPTHFNENENDETMISDPLFQSISPNTDLYCESDGPQVRKKQKKSSVGIFVPVRIKSEEDFENSPINRKQSPFRDLSSKPTNTTFLKKFYSCQKCEYLAESREDLRFHLTDTHPKTKLFPCSKCDHIATRAAHLKRHINNRHTRSDVHQCTFCDYSATELHNLKDHINSKHTRTHLYPCKLCSYVATRSTHLDRHVNNIHTRNVTYPCELCDYSSTEIDCLKKHINSKHTRSKLYACSHCNYEATQNSTLNVHINSIHTKEKLYPCELCSYKATESGSLKKHMWTVHTLGSDHKCHLCNFQTKQRKDYNKHLQMVHPGELVHRCKQPDCDYSTAKAATLRKHCSVKHNLANFRKCLYCSYTSAQQNSLENHMNSKHRHLRPHACHLCDFTATQLGTLKRHINSKHTKEKLYRCTECEYVATQPDTLKSHVNNRHTNVKPYICQYCGYAAAKLSYLYIHINSKHTRSKLFPCKFCKYSGTTKAAINKHVTAKHKSQIKGYLASLCESFSEKIEEDDCDGDLSDRTVDICEVKIIQSCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -