Ecoc035471.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294069.1:35219596-35221978[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.8e-05 0.021 17.0 3.3 1 23 118 140 118 140 0.97 2 13 0.0003 0.072 15.3 0.2 2 23 147 168 146 168 0.96 3 13 0.00084 0.2 13.9 1.3 1 23 177 199 177 199 0.98 4 13 0.22 52 6.3 0.9 1 23 207 229 207 229 0.92 5 13 4.8e-05 0.011 17.8 1.1 2 23 234 255 233 255 0.95 6 13 0.00011 0.027 16.6 1.2 1 23 264 286 264 286 0.98 7 13 0.00044 0.1 14.8 1.1 2 23 296 318 295 318 0.94 8 13 0.0005 0.12 14.6 6.3 1 23 327 350 327 350 0.96 9 13 0.51 1.2e+02 5.1 7.3 1 23 357 379 357 379 0.96 10 13 2.8e-05 0.0067 18.5 0.3 1 20 389 408 389 409 0.93 11 13 0.14 32 6.9 3.3 3 23 473 493 472 493 0.98 12 13 0.019 4.5 9.6 0.4 3 23 505 525 503 525 0.94 13 13 0.065 15 7.9 0.9 2 23 549 571 548 571 0.94
Sequence Information
- Coding Sequence
- ATGAGTGAGCATGGCGAAGTAATACGTTTATGCGTTTTGAACTGTGTTGACGATAAGAAGTGTGCTGCTGATGAATTAACTTGTAACATTAAAGTGGAAATTACGGGGGAAGATGAATTCAAGGAGTATCAAATTCAAAATGCAGAAAACTACGGTGACATTTGTATGACTGATAATGGCAATTATAAACAAGAAAACACATCTGATCTGGATATGTCAGAAGATATCAAGTCAGAAACGGGATCGGAAGAAGAACTTTCGGATGACGTGACTGACGGATTAGAACGAGAATCAATTTTGAATGAACCCCTTATAGAATTGGGTATAACCAAAGGTAAAATACGGAAGTTGCATGTATGTGAAGTTTGTGGTTATTCATCGTATCAAAAAAGCCACTATATGCGTCACCTGCAAGTACATGTCAAACCTTTTGAACTTTCATGTGCTATTTGTGAGAAAGATGTAGCTACAAAGAAACAACTCTCCTCACACATGTTAACACATAGGGGTCTCAAGGATCCTTCGAAATTCCAATGTAATCGTTGCAATTACGAATCAAATAGACTAACCAATGTGACACAACACATGCAAGTACACTACAAACCCAAAGTTGTTACTTACGAATGTGCTATTTGTGACTTCAAATCGAAGAATGAAAAGAAATATAACTTACATTCTGCACAACATGAGAAGAAATTAAAATGTGATATTTGCAATCTTACTTTTATGTTTAGATCACTTTTACGTAAACATATGTCAGATCATAAATGTCCTTCTGATAATACAAGATATCAGTGTCCTGAATGTTCATACTCTGGAAATAAGTTACATAATCTCAAGGTACACATGTACGTCCATAGAAGTGATTTCGAAATGGAAATGTTGCCGTGTCCTCATTGTCCATTCAAATCCAAAAGGAAAACTGACTTAGAACAACACATAACGGTGAAACACAAAAGAGAAGATGAAATATTGATGTATGAATGTGACCATTGTCAATTCAGAACAAAAAGGCGCTCTCATTTAACATCGCACATGACAAACATGCATCAAGAAATATGTGAAGTGTACATTTGCACCTATTGCAATTACAgttgtatatcacatttcttgtaCAAGATACATGTTAGTCACCATGAAGAAAATGGATTCCAAGATTATCCTTTTCTATGTTCCTTGTGTGGTAAAAGATATAAAAGAAAAGTTgatttaaataaacatattgCATGTTCCCACAACAGTAAAGTTGTAAACACTGTTGGTTCAAATCATGTTATTGATATCAAGATAGAAGAAGAGTCggtagaaaatgaaaatactttCAGATGTCAACAATGCAATTTTGAAGATGAGCAAGAAGCTATGGTTAAGATGCATACCGTAATTGTTCACAATGGGAGTGgtattgataatttttgtaCAGAATGTACATTTCATACTACCTCGAAACAACTGTACATACAACACTTGAAAATTCACGAGATAGATATAGAACATTTGAAACCACACTTATGTGAAGTATGTGGAAGTCGATGGATTAGGAAGGGAGATTTGACCAAACATATGTCAGCTCATTGGGGATTAGAGGGAGCAGAATATcgatatgaaagaaaaaaaccCACAGTAAAGTCTATGAAACCTATTCAATGTGTATTTTGTTCTTATAGTACAAAAGTTAGGTATTATTTGTATAAACATACAGCAAAAGTACATGGAATAGAAAAAGCTGATGCAAATTCTGATGACAATTGA
- Protein Sequence
- MSEHGEVIRLCVLNCVDDKKCAADELTCNIKVEITGEDEFKEYQIQNAENYGDICMTDNGNYKQENTSDLDMSEDIKSETGSEEELSDDVTDGLERESILNEPLIELGITKGKIRKLHVCEVCGYSSYQKSHYMRHLQVHVKPFELSCAICEKDVATKKQLSSHMLTHRGLKDPSKFQCNRCNYESNRLTNVTQHMQVHYKPKVVTYECAICDFKSKNEKKYNLHSAQHEKKLKCDICNLTFMFRSLLRKHMSDHKCPSDNTRYQCPECSYSGNKLHNLKVHMYVHRSDFEMEMLPCPHCPFKSKRKTDLEQHITVKHKREDEILMYECDHCQFRTKRRSHLTSHMTNMHQEICEVYICTYCNYSCISHFLYKIHVSHHEENGFQDYPFLCSLCGKRYKRKVDLNKHIACSHNSKVVNTVGSNHVIDIKIEEESVENENTFRCQQCNFEDEQEAMVKMHTVIVHNGSGIDNFCTECTFHTTSKQLYIQHLKIHEIDIEHLKPHLCEVCGSRWIRKGDLTKHMSAHWGLEGAEYRYERKKPTVKSMKPIQCVFCSYSTKVRYYLYKHTAKVHGIEKADANSDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -