Ecoc057113.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- L
- Assembly
- GCA_958510875.1
- Location
- OY294071.1:36472781-36483880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2e-05 0.0047 19.0 0.3 1 23 20 42 20 42 0.99 2 20 0.063 15 8.0 5.8 1 23 48 70 48 70 0.97 3 20 9.7e-07 0.00023 23.1 3.2 1 23 76 98 76 98 0.99 4 20 0.00014 0.034 16.3 0.3 1 23 104 126 104 126 0.99 5 20 0.0017 0.41 12.9 1.1 1 23 148 171 148 171 0.96 6 20 0.047 11 8.4 0.4 3 23 199 220 197 220 0.93 7 20 0.0014 0.32 13.2 0.3 1 23 254 277 254 277 0.97 8 20 0.037 8.8 8.7 0.0 3 23 384 404 383 404 0.95 9 20 0.004 0.95 11.7 3.2 3 23 414 435 412 435 0.86 10 20 0.0088 2.1 10.7 1.5 1 23 440 463 440 463 0.96 11 20 0.0043 1 11.6 3.9 1 23 529 552 529 552 0.97 12 20 9.4 2.2e+03 1.1 0.7 2 23 603 626 602 626 0.66 13 20 0.00043 0.1 14.8 2.6 2 23 637 658 636 658 0.97 14 20 0.0033 0.79 12.0 0.5 1 23 667 689 667 689 0.94 15 20 2 4.7e+02 3.3 0.5 3 23 698 718 697 718 0.95 16 20 9.8 2.3e+03 1.1 1.1 1 13 763 775 763 777 0.81 17 20 0.0012 0.28 13.4 0.1 2 23 851 872 850 872 0.95 18 20 0.019 4.5 9.6 0.1 1 23 880 902 880 902 0.94 19 20 0.016 3.9 9.8 4.3 1 23 909 931 909 931 0.97 20 20 8.4 2e+03 1.3 1.1 2 20 964 982 963 984 0.90
Sequence Information
- Coding Sequence
- ATGCGTGTACTAAATGGACCATATTTTGTTACAGAAACTTCAAGAATGGAAGAGCCATACGAATGCAGCGTctgttttttgacattttcaagaTCTGCTGCTCTAGATGAACATATGCAGacTCATACTGATCAACTCCAATTCACATGCTCGTACTGCCCAAGACTGTTCAAACACAAAAGATCAAGAGACAGACATACAAAACTTCATACGGGCGACAAGAAATATAAATGTCAGCAATGCGATTCGGCATTTTCTAGAAGcgATCATCTGAAGATACACATGAAAACTCACGATAGTCGTAAGCCTTATAAATGTGGTACATGTAATCGCGGCTACAACACTGCAGCCGCATTGTCTTCACATCAACAGAGTCATTTGAAGCAAGAATCAAGATCAGGAAGTCGTAATAGTAGAGGAAGCACCCCTAGTCCAGGTTTATTTCGTTGTAACCAATGTACAGAttcattcaccaaacaagaactTCTCCAGGAACATCTTATTTCGTACCACAACGATGAAGACGCTCCAATCAGAACACCAGATCGCATATCAGTGGAACTAAAGAGTCAACATGATGAATTGAAGATAATTTGCATGTACTGTTCTAAAGAATTCCCCAGTTTAGAATCGATGTACCATCATGTCAGTATAACTCACAGAGACTTCCAAAATGGTGTTACGTCTGCTCTGTCCACTCAATCTTCGAGTCTTCAAAGTTCTCCAAAAAATGAATTATGTCAAAACGGAACACCTACGTATGCTTGTGATAAATGTACAATGCAGTTCGAATCAGTTCAAAATCTAAAGGATCATTTGAATATGATCCACTGGAGACCCATCTTAACAAATAACCTGAAAGAATATAATGTTAATCGTGCCAAAACTGCTGGAATGGATAAAAGTTATTCCCCATTCCAAACGCACCCTACTGATTTGAGTAGAAAGAAATGCAAAGATGATTATTTCGATGCCAGTGCTAAGAAAAGGAAAATTGATCAACATTCTCCATCTATGACAAGTCCATATGATGCTAATGACAAACCTTGCATTTGTTCCTGCTGTTATGCACAACTTCCTAATTTCAAGAGTTTTTTGAATCACATGGAGACACATATGGCCTCCTCTAATACATCTTTCCTAGGATTTTGTCCATTTTGTGGAGAACCTGGCCGAGACCCTGTTTCGTTTACAAATCATATATTCGGTCATGCTATTGCTCAAGTGCCTGGAACCTGTTGTTATGTTTGTAAAAAGTCTTTCGAACACTTGGATGACTTACAGAAGCATTTTGCAGAAATTCATGTCATTCCAATCTACAAATGTAGTATTTGCAACGAAATATTCGATTCTAAACTTACGATGCAGATGCATTTTACAACTAAACATAATGAGGAATGTCATCACTTCAAATGCTATCTTTGTACCAATCAAATATTCCACGATAGACTTTCTGCAGAACTTCACATCTCGATGAAACATTATCATCAATTTGTACCAAGTGTCAACACGACAAATCAATCACTGTTGACAAGTCAGTATCAAGTCGAACTCGATAAAAGATTGAGGGATTTCGGGTTCCTTTTCCAATGCACATTCTGTCAAGAATGTTTCAAGGATCAGTATTCTCAATATATCCACATTTTAAAGGAACACAACGATACTAAAGAGGGTGAAAAATACCTGCTAGAAACTGCACTGAATCAACGTCAAACGCCGTCCACTTCTCCTAGTTTTTTATTCTCCAAATCCATCGCGTCACCTGACAATGTCAACAAGTTTGATGTGAAAAATGCCAAAAGTTTGACTTGTGATATTTGCAATAGGAGCGACATTACCACTGAGGCTGATCTTATAGCTCACAAGAAAATACAACACGCTAAAAGCAAAATACGTTCCGTAAGCTTGCAATGTGCTTATTGCAACGAATATTGTAAATCCAGAACTGACCTGGAAAACCACATGAAAAGTCATCAAGTCAATTGTGGCAAAGGAAAACACAAATGCAATATTTGCGATGAAGTTTTCTCTTCCAGTCTGATTTTAGCAGATCACAAACTTACACATTGTAAGATTGTAGATGGTAACAATTGTTTACAATGTAAGGCGGTTCTGTCGgatgaaaaattgttttatagCCACCAGTTACAACATAGTAATGGTCCTATCAGACCCAACTCACAAATATCTCTACCTGCCAATTGCATCATATGTTGCCAAACTCTTCAAACTGAAGTAGAAATAAAATTACATGCGAAATTCCATCTGAAACATTTGACAAAAGAGTTTGTTTGTGGTATATGTAATAAATTATGTGATAACCAGAATTATACTGGAGTTGatggtatgtctgaacaatcgAGAAACAAATTTACTGTAACTATTTGCAAAGATTGCAATAGGAAAAAAGAAGGTACTCCcaatatttctcaagaaaacgtgaaaaataaggaaaacgaaatttatttaCAATGCCCTCAGTACATTCGCGACAATGAAGTTCAAGATCAAGTCAACCTACATATGACAAGTGAAATAAGCTCCAACCTAGAATGTCGTTTATGCAAACAAATATTCCCCTCTCCTTCAAAACTCCAGGTCCACCTGATTGAACATAATTTTTACGGAATGAATCAATACAATTGTTATGTTTGTTCTTCAGTTTTCACAGCAGCTAGTGGGCTGCAAAACCATATTGTAGGACATGGTTTGCAAAGCAAACCTTACGAATGTTCACATTGTCAAATGAAATTCTTTTTCCGGAGTGAACTGGATAATCATAGATTTATCCATTTGAACTCACCACAACAGAAATGTGAAACTCCAAAGTCACACCTCCAATCAAACGGAACTGACTTATATGAAAACAGAAGCAGCCCACAGTACAAAACCTGCAAATACTGTTCTAgttcatatttaaataattcatttttcacCGAACATTTGACTCAGTGTCCATTCCGAGTCGACTTGAAACAAGAGTGCTACGATGTAGACATTGAAAGTACAATCAAGAAGGAAGTTGCAGACAGTTCTCaagaatttattaatgaagagCAATAA
- Protein Sequence
- MRVLNGPYFVTETSRMEEPYECSVCFLTFSRSAALDEHMQTHTDQLQFTCSYCPRLFKHKRSRDRHTKLHTGDKKYKCQQCDSAFSRSDHLKIHMKTHDSRKPYKCGTCNRGYNTAAALSSHQQSHLKQESRSGSRNSRGSTPSPGLFRCNQCTDSFTKQELLQEHLISYHNDEDAPIRTPDRISVELKSQHDELKIICMYCSKEFPSLESMYHHVSITHRDFQNGVTSALSTQSSSLQSSPKNELCQNGTPTYACDKCTMQFESVQNLKDHLNMIHWRPILTNNLKEYNVNRAKTAGMDKSYSPFQTHPTDLSRKKCKDDYFDASAKKRKIDQHSPSMTSPYDANDKPCICSCCYAQLPNFKSFLNHMETHMASSNTSFLGFCPFCGEPGRDPVSFTNHIFGHAIAQVPGTCCYVCKKSFEHLDDLQKHFAEIHVIPIYKCSICNEIFDSKLTMQMHFTTKHNEECHHFKCYLCTNQIFHDRLSAELHISMKHYHQFVPSVNTTNQSLLTSQYQVELDKRLRDFGFLFQCTFCQECFKDQYSQYIHILKEHNDTKEGEKYLLETALNQRQTPSTSPSFLFSKSIASPDNVNKFDVKNAKSLTCDICNRSDITTEADLIAHKKIQHAKSKIRSVSLQCAYCNEYCKSRTDLENHMKSHQVNCGKGKHKCNICDEVFSSSLILADHKLTHCKIVDGNNCLQCKAVLSDEKLFYSHQLQHSNGPIRPNSQISLPANCIICCQTLQTEVEIKLHAKFHLKHLTKEFVCGICNKLCDNQNYTGVDGMSEQSRNKFTVTICKDCNRKKEGTPNISQENVKNKENEIYLQCPQYIRDNEVQDQVNLHMTSEISSNLECRLCKQIFPSPSKLQVHLIEHNFYGMNQYNCYVCSSVFTAASGLQNHIVGHGLQSKPYECSHCQMKFFFRSELDNHRFIHLNSPQQKCETPKSHLQSNGTDLYENRSSPQYKTCKYCSSSYLNNSFFTEHLTQCPFRVDLKQECYDVDIESTIKKEVADSSQEFINEEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -