Basic Information

Insect: Endomychus coccineus
Gene Symbol: RREB1
Assembly: GCA_958510875.1
Location: OY294068.1:39642726-39649848[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.4e-05 0.022 16.9 1.2 1 23 65 87 65 87 0.98

2 15 0.00013 0.031 16.4 0.3 1 23 101 123 101 123 0.98

3 15 5.4e-05 0.013 17.6 6.4 1 23 129 151 129 151 0.98

4 15 0.004 0.95 11.8 4.5 2 23 243 265 243 265 0.97

5 15 0.48 1.1e+02 5.2 2.6 1 20 311 330 311 332 0.91

6 15 0.18 44 6.5 0.1 1 23 466 488 466 488 0.96

7 15 7.3e-06 0.0017 20.4 0.8 1 23 497 519 497 519 0.99

8 15 0.00074 0.18 14.1 3.1 1 23 525 548 525 548 0.97

9 15 0.00044 0.1 14.8 3.0 1 23 954 977 954 977 0.97

10 15 0.00044 0.1 14.8 0.4 2 23 1186 1207 1185 1207 0.97

11 15 0.11 27 7.2 6.3 1 23 1213 1236 1213 1236 0.97

12 15 0.015 3.5 10.0 1.7 1 20 1264 1284 1264 1285 0.96

13 15 0.19 45 6.5 0.6 1 23 1346 1369 1346 1369 0.95

14 15 0.015 3.5 10.0 0.4 3 23 1416 1436 1414 1436 0.93

15 15 0.0067 1.6 11.0 5.9 1 23 1442 1464 1442 1464 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.4e-05	0.022	16.9	1.2	1	23	65	87	65	87	0.98
2	15	0.00013	0.031	16.4	0.3	1	23	101	123	101	123	0.98
3	15	5.4e-05	0.013	17.6	6.4	1	23	129	151	129	151	0.98
4	15	0.004	0.95	11.8	4.5	2	23	243	265	243	265	0.97
5	15	0.48	1.1e+02	5.2	2.6	1	20	311	330	311	332	0.91
6	15	0.18	44	6.5	0.1	1	23	466	488	466	488	0.96
7	15	7.3e-06	0.0017	20.4	0.8	1	23	497	519	497	519	0.99
8	15	0.00074	0.18	14.1	3.1	1	23	525	548	525	548	0.97
9	15	0.00044	0.1	14.8	3.0	1	23	954	977	954	977	0.97
10	15	0.00044	0.1	14.8	0.4	2	23	1186	1207	1185	1207	0.97
11	15	0.11	27	7.2	6.3	1	23	1213	1236	1213	1236	0.97
12	15	0.015	3.5	10.0	1.7	1	20	1264	1284	1264	1285	0.96
13	15	0.19	45	6.5	0.6	1	23	1346	1369	1346	1369	0.95
14	15	0.015	3.5	10.0	0.4	3	23	1416	1436	1414	1436	0.93
15	15	0.0067	1.6	11.0	5.9	1	23	1442	1464	1442	1464	0.98

Sequence Information

Coding Sequence: ATGGATGTAGCTCCTAGTCCAAGAATATACATTACCAAAGAAACTCCATCGAACCAAAGCAGCCATAGTGATTCAGGGATATTTTCAACCAGCAATACAACCTTGGACAATACAGATCGCTTGAACCGTACTACCGTTTCTGAAAATTACGACACGGACAACAGAAGCGACTGTAGTTCTCCAGAAAGCAGATACGTGTGTCCAATTTGTAATACCATGCTCACCTCTCAACACGACTTCACACTTCACATCAAATCCCATAACAACGAATTAGAAGTACACCATGATAACGAGAAAGGATATACTTGCAGGATATGTTCTAAAGTGTTAAGTTCTAGCTCCAGCTTGGACAGACACGTTTTGGTCCATAGTGGGGAAAGGCCTTTCCATTGCAAGTATTGCGGAGATACTTTCACAACAAATGGGAATATGCATAGACATATGAGAACTCATTCTCATAAAGCAAAATGTTATGAATCGGACGCGAGTACGGACAGCAATGTGAGCAATAAAAGCATCGAattcaacaataacaaaattgaatcaaaattgaataacaaGCGAAAATTAGAAATCGAAGAGTATAGTAATAAGAGACCTGAATCATACTATGAGACTGAAAACCAACAACAAACGTACAGATGTCCTGTTTGCGAACGAGGCGACTTCAATTCCTTATCCATTCTCGAAACACACGTAGCAGATAATCACCCAGATTATCTAGCAAAATGTCATCAGTGCAACCAAATCTTCCAGAACCAtaaacaattagaaaatcacATAAATATCTCCCATGAAAGCGCAAACAACAAACACTCAGTTGTTGGTTTCAAGGATTTAACTTTcgttgatttttccagcggaaAATTTCCTCACATTGCTCGTTTCGAGTGTGAGAAAAATCTGCACAAAGTTTCTGGAGCCTTGAAATTCCAATGCAAGAAGTGTACTCGAGCTTTCCCCTGTTCCAAATCCCTCGAATATCACGAAAAAGACTGCTCCATTAGCACCGAAAACGATAACGGCTTAGATCTTCCCGTACCTTCAAAAGTTTCTAATACTGAAGTTCGTCGTAGCGATTTCTTCTCACGTTTGAATCTACAAGATAACTCTCCAGAAAAATCGTTGCCTTTGCCTAAATTACCTGAAAGCCCTGTAAAACTAAGACATCTCCAGGTTCTAGGCTCTGATACCAAAGACTTGGCAGATATTCAAAGCATCATATCTATGACCAGCAGTGGAAGTCTCCTTCAACAACTACAAGCTAAAACTAGCGAAGTTACAATATCCAATCAGAAATCAATGGAAATAATTCCAGAATCTATGAAACATGAAGAGGAAGAAATTCAAGATGCGTTCGCCATGGAATTTCGGAAAATGAAATTGAGAGGTGAATTTCCTTGCCGACTTTGCACTGCTATATTTCCCAACTTACGTGCTTTAAAAGGACATAATAGAGCACATCTCAATGGGAATAATAATGGCACTTATAGATGCAATATGTGTCCTCATTCATCAATAGATAAAGCAGCATTAATTCGACATATGCGTACTCATAATGGAGATAGACCGTACGAATGCTCTCTATGCAATTATGCCTTCACAACCAAAGCTAATTGCGAAAGACACTTAAGAAATCGTCATGCTAAAACCACAAGAGATGAAGTCAAAAAATCTATTATATACCATCCTTCCGAAGACCCTACCAACGAagacttgaataaaataactagagatgaatctaaaaaaaatttgtgtcCAGCAGATACCGAAGACAGCTCTCCTGAAAAAATTCAGGGCTCAATTCCGAAATTTTCGGATATGCGTCCAGTTATTCCAGATCTGATCAAACCTGAAGTCACACATTTCGTTGCATCCGAAATAAATCCACTATTGAATAATATCCAAGCtctgaaagaaaatttcaatatatctttAGGAAAAAAAGATTCGACACCAATTTTCCCCACTATGAGTGACGTTATACGAAGTGAAAATCTGAAGAAAGAATACAGAAATATGCAAAACGGTGTAGAACCTTCAGTATCTCCTTGTTTCCCAACTGCTTATGATTTCAGTCCAAAACTAAACAATGCCTCTAGTCCACACGCTGTGCCAACAAAGATCCACGTCAAGAGTCTGGAAACGTTGAATATGAACTCTTACGATAGTCATTCTGATGATGAATATGACGATCAAGATGAGGAACCTTTGGATTTGGTGCTGGACTTGAGCAAGAAGAAAACTGAAAATGACAAGAAAACCACCGAAGATTCTCCTGAAGATTTAAGTGTTAGATCAAGACCTTCCATTGTAGCTCCTCCGGAACTAGCAGATATTTTCAATCCACATATTATGAAAGGAGCCCCAAAGATTGATCCTGCAGCTTTCTATCAATGGGCGCTTTTCAGGAACAGTTACGCAGGTCTGCCGAATTGGGGAGGAATTCCTATAAATCCATTTATTTTACCGAGTTTACAAACTCCCATGTCACCACCATCACCACAGGACATGAAAGAGAGATTGAGGCAATTGTGTGGAGGCTCAGTGATATCAGACAACCGAATTAAGACTCTTCATCAGATGAGAAATGCTGGAATTCCGTTCAATGGCTTCAAACATCCTAGGCCTGATACCTTCGAAAGTAACTTTCCTGTATCTAAGAAACCAGAGGAAATTAGTAAACCTTTATCCCTCCACATTGATCAGAACTTCAACGATAGTATGCTGAAAATCCACAGCCCACTATCTCAACCTAAATCTGATGTAATGCATTCACCAAATTCCGTTAAAATGGTGATTAAAAATGGCATTTTGATGCCAAAACAGAAGCAGCGACGATACAGAACTGAAAGACCTTTCACCTGCGAACACTGTTCGGCCAGGTTTACCCTGCGTTCGAATATGGAGCGGCATATTAAGCAGCAACACCCTCAGTTCTGGTCGCAGCGCCAAAGAGGCAATGTGGGTAATCCCGGAAGAAAACCCCAGGGTTTGCCCAATAAATCCAACTTTTGTGATCTCAGCATTCCAAACTACGAACTACCAAAGAATGAAGACTTTGCGGAATCCAAAGAATCTTTAACTGAAAAATTTAAGTACGTACTATTAGCGCAACATCTGaaagcaaataaatgtaatcCACATCCCGACATTAAAAAAGAGGAAGACGAAGAAGATGCTCTCGTTATCGACGAAAATGATGATAAACAGATGGAAGCGATGAATTGTACCCAAGAAAGAAGTCGGTCATCAGTTCTCGAGGACCTACGGCCGATCGACACCAAGTTTGTGAGAAACGAAGAGAATCAGGATTTAGTGCCCATTTCGCGGTTACTTGATAATGCCTCACAACAACAATTCAAGGAATTCTTCAAGAGGGAAACGGAAGAACATGAAATTGGTGGAGTGAGTGAAGAAGATGAAGAAGGTCTTGTCGCTAGTGGTAGCACCAGCGAAgggaatatctccggaactgacGAAAATAGATCTGAATCGGAAAATGCAACACCAGTCAAGAAAAAATCTGCTTACTCATTAGCCCCTAACAGGGTGAGTTGTCCTTATTGCAGTCGCAAATTCCCATGGACCTCTTCCTTACGACGTCACATTTTGACTCACACGGGTCAAAAACCCTTCAAATGTAGCCACTGCCCACTTTTGTTCACCACAAAATCGAATTGCGACAGACACCTCTTGAGGAAACACGGAAATTCCGCAACTACCATTACCAATGATGCCATAAACAATAACACTAATTATTTGATGAGGAATGTCCCTGAAAGACCATACAAATGTTCGAATTGTCCAAGCAGCACCTTTTCTACACGCTCAAACCTACATAAACACATAAGCTGCAAACACTCCACCAATTCCCAAGGAGATGACATCAAAGCTCAGGGTTATGAAGCAGGCAGTTCGGAGGATGAAAAAGTTGTCACCACAGCCGTGAGGGGTGACTGGGAAAACCATGCTTCCCAAAACAAACTCATCCAGGACATTCAAAATGTTCAGATGTCCAATTCAGATCAACCCTTCAAATGTCATCTATGCGAAGGTTCCTTTGGCGACCGCCAGGAAGCCTTAGATCATATAAAAGGAAAACATACATCAGAATACAATCTGTTGATGTCAAAAAACGCTTTGGACAGCAGCGCAACTACTCCTGAAGAGGGGAATCATAATGACGAAGACGATAACGAAATTCGAGGAAAATTTCCAGATTATTCGAATCGTAAAGTTATCTGCGCATTTTGCATGCGTCGGTTTTGGTCAGCCGAAGATCTAAGACGGCACATGCGTACACACACAGGAGAGAGACCGTTCAGTTGCGACATTTGTCGAAGGAGATTCACGCTAAAACACAGCATGCTTAGACATAGGAAAAAGCATAACGTCAACTTCGATAATGATAACATCAATAGCGACGAAGACGGCAATGGAAATCCAGTAGGCTATGACAATAATAACTCATCCGCAAAACCAAACGAAAAAACGGACGAATCTGATTGTAATGAAGGAAATGACCTTATCAGTAACTTGTTAGGGATTGGGCCTTCCTTTATAGATAAGGCGCTAACCGGGTCGGCAGACGATGCTGCTAAACTTTTAGGCGTTCGAGAATGA
Protein Sequence: MDVAPSPRIYITKETPSNQSSHSDSGIFSTSNTTLDNTDRLNRTTVSENYDTDNRSDCSSPESRYVCPICNTMLTSQHDFTLHIKSHNNELEVHHDNEKGYTCRICSKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSHKAKCYESDASTDSNVSNKSIEFNNNKIESKLNNKRKLEIEEYSNKRPESYYETENQQQTYRCPVCERGDFNSLSILETHVADNHPDYLAKCHQCNQIFQNHKQLENHINISHESANNKHSVVGFKDLTFVDFSSGKFPHIARFECEKNLHKVSGALKFQCKKCTRAFPCSKSLEYHEKDCSISTENDNGLDLPVPSKVSNTEVRRSDFFSRLNLQDNSPEKSLPLPKLPESPVKLRHLQVLGSDTKDLADIQSIISMTSSGSLLQQLQAKTSEVTISNQKSMEIIPESMKHEEEEIQDAFAMEFRKMKLRGEFPCRLCTAIFPNLRALKGHNRAHLNGNNNGTYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTRDEVKKSIIYHPSEDPTNEDLNKITRDESKKNLCPADTEDSSPEKIQGSIPKFSDMRPVIPDLIKPEVTHFVASEINPLLNNIQALKENFNISLGKKDSTPIFPTMSDVIRSENLKKEYRNMQNGVEPSVSPCFPTAYDFSPKLNNASSPHAVPTKIHVKSLETLNMNSYDSHSDDEYDDQDEEPLDLVLDLSKKKTENDKKTTEDSPEDLSVRSRPSIVAPPELADIFNPHIMKGAPKIDPAAFYQWALFRNSYAGLPNWGGIPINPFILPSLQTPMSPPSPQDMKERLRQLCGGSVISDNRIKTLHQMRNAGIPFNGFKHPRPDTFESNFPVSKKPEEISKPLSLHIDQNFNDSMLKIHSPLSQPKSDVMHSPNSVKMVIKNGILMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGNVGNPGRKPQGLPNKSNFCDLSIPNYELPKNEDFAESKESLTEKFKYVLLAQHLKANKCNPHPDIKKEEDEEDALVIDENDDKQMEAMNCTQERSRSSVLEDLRPIDTKFVRNEENQDLVPISRLLDNASQQQFKEFFKRETEEHEIGGVSEEDEEGLVASGSTSEGNISGTDENRSESENATPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTITNDAINNNTNYLMRNVPERPYKCSNCPSSTFSTRSNLHKHISCKHSTNSQGDDIKAQGYEAGSSEDEKVVTTAVRGDWENHASQNKLIQDIQNVQMSNSDQPFKCHLCEGSFGDRQEALDHIKGKHTSEYNLLMSKNALDSSATTPEEGNHNDEDDNEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDNDNINSDEDGNGNPVGYDNNNSSAKPNEKTDESDCNEGNDLISNLLGIGPSFIDKALTGSADDAAKLLGVRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -