Ecoc003354.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- Zfpm1
- Assembly
- GCA_958510875.1
- Location
- OY294067.1:8068308-8088641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.2 1.2e+03 2.0 0.1 2 23 7 28 6 28 0.89 2 15 2.4 5.7e+02 3.0 1.8 1 10 494 503 494 505 0.93 3 15 3.2 7.7e+02 2.6 0.5 2 23 592 614 591 614 0.91 4 15 4.9e-05 0.012 17.8 1.1 1 23 622 644 622 644 0.98 5 15 0.00018 0.043 16.0 1.7 2 23 647 668 646 668 0.97 6 15 0.00018 0.042 16.0 1.0 1 23 674 696 674 696 0.99 7 15 3.1e-05 0.0074 18.4 5.3 2 23 703 724 702 725 0.95 8 15 0.14 34 6.9 1.5 5 23 738 756 736 756 0.97 9 15 2.1e-05 0.0049 18.9 2.6 3 23 763 784 762 784 0.97 10 15 0.19 44 6.5 0.0 2 23 800 820 799 820 0.96 11 15 0.00033 0.079 15.2 1.2 1 20 826 845 826 848 0.92 12 15 5.8e-05 0.014 17.5 0.4 1 23 856 878 856 878 0.99 13 15 0.00075 0.18 14.0 3.7 1 23 884 906 884 906 0.98 14 15 8.2e-07 0.00019 23.4 3.5 1 23 912 934 912 934 0.98 15 15 0.0022 0.52 12.6 7.3 1 23 940 962 940 963 0.96
Sequence Information
- Coding Sequence
- ATGGAAATGAATAATGTGGTTTGTCCTGTTTGTACTTTATATCTCAGGCCTGGTATTACATTGAAAAGTCATTTAACCAGTCATCCCAAACACAAAGTTATTGAGGCTTTAGTAAGGTTATCTTCGGctgatattcaaaatttagaaCCAGTTACAGAAGCTCCAGAAAGTAATAGTAATACTAACAACAATAGTGTGGGAAACACGCAACTCAATACTTCTGCAGTAAACCAGACATGGAATCAAGACAATTGTGCAGCAACCACAACTACTCCCACTCCGGGAATGCAAGGCaatcacgtttttatatatcaacaaagtatGAGTACATCTGGTCCTCAGCCCAATGTGCTAAATGTGAATCCCATGTCACAACAATACGTTATACCCACTGTCTTGAATCCCCAAATGATGCCTTATGTATATCAACAACAGCAGGTTATTATGTCGAGCGGCTCATGTATTCCACAGATGCGTGTTCTTCCATTCGAATTAGCTAATGATACAACAGATCATTCCAGTAATAGTGGAAGCGAAAGCCATCCCTGTATAGAAGAAGTAGAAATTGAGAAAACTCAGTCGAAACTCATTGAAATTGCCGAGTTGGAACCATCAAATTCACAAAAAAGTTTCGAAGATAATTTGGAAGATGACAAATTAGATTCTAGTAAACCCGAAAAAATTGAAGACAAAGGTTATAAAGTTGAAAATGAAGCCGTTCTAAATATGGGTACAAGATACGAAGTAAATCACGAAACACCATCCTGTTCGGATTGGAATACTTCGTCCGAACAACACGACCTGAACAAAGCGTGTCAAACTCAGAACGTGGTGAACGTTTCGCCCAGATCCAGCGAACACGAGCCGGAAATTATCGAAAATCTAgataaaaaatactattattttaACGAAACCGAAAATTCTTCAACGTATCATTCTAAAGAACATATGAATAACATTGTGTACGATCAACCGGAACCCATTTATTCCACGGCCAATATACTAGAATCTAACGAACACCTAGACTTCGTCGATATGGACGGGATGCACGTTATCATCGGAGATTTCGCCACGAACCCGATCATATCTCAGGTGGAAAACTATGAAGTGAACAGAGCCGATAGGTCCGGGATCTTGATGAATATCGGCGGCATGATGGACTCGCAGAAGGAAACGTTTAACGGACATGCGGAAATCGAGGAAAGTATGTCGCGAGGGAGTACTATGGTGAATATGCGTACAGACGAGAGGATGCCCCCCAGAGGGGAGTTATCGGGGCAGGAGAGTATTGGTGATACGAGTGATATGAATTGGAGTCGTCTGCATTATAACGAAGGGAGTTCAGCGAGAGAAAGTTGGGAAGCTTCTGACGTATCAGACGTAGACGAGCCGCCAATGGACCACCAGGTACAATTAGCAGCCGAGCCGGATGATAATGATGTCCCCAGCGTGGTGGGTTACATCGCACCCCCTTTAAACTTCAAATGTTCGTTGTGCGGTGAAGCGTTTCCATGCCTTCAAGATCGAAAAGAACACGACCTGGAACAGCACCCGGACAAGTTGAAATCCACGCTGGTGGGCGGCAAGATCGCCGGTCAGCGAAAAGTAAAAAAGTTGGTCGTCAAACTGAAATCCGAAACGGAAAATTTCGACGTCGTCTTCACCAACAAGATCAAGGTGGAGACTAACAACGAAACGAAAACAACGGACGACGACCAGATCCTGGCGACCGAGCTGAAAACGGACGAAAACATTACGGTCGATTCGAGAACCGTCTGTTCATTGTGTAACTGCGTGATGTCGGACGTGAAGGCGCTGAGAGAACACAAACTGGAGGTGCACAAGATATCGCCGGATCTTCGTTTCAAGTGTTCGACCTGCGACGAAAGCTTTCCGAACGAATACAAATACACGGAACATCTGAAGGTGCACCCGTTGGAATGTAGGCTATGCGGGAAACTGTTTTACCGACGACAGAACATGCAGTTGCACATGAAACGACATCTAGGTATCAAACCGTACAAATGTGAGATATGCGAAAAGGCCTTCTTGACAAAACAGAAACTGGAAGAACACCGAAATACTCATACCGGCAATTCACCAATCAAATGTACACTTTGCGACGAAACTTTCCGACGACACTCGAACCTTGTACAACATCGCAATCGGCACCACCTAAAACTGAAGAAGAAAGTCAAGGATTACGTGTGTTACTGTGGCGAATACTTCCATTCGAAGAAAAAGTTGGCGTGGCACAAGGAAACGCACGACCCGAAACCGAAAGCCTGTACGAAGTGCAGCGAGAAGTTCATCCACTTGTCAAGTCTGACCAGACATATGCGTCGCGCGCACAACGAACGCTTCCTGCCGAAAGAAGAGCGCAGCAACGAAAACGTGGAATGTCCCATATGCAAAGGCGTCTACTTACGTTCCTCGCTCGACGTTCACATAAGGAATCACAGCGGGCTGCGGCCGTTTTCCTGCCTCATCTGCAACAAAGACTTCACCACCAGATGGAACCTCAAGCTGCACAAGTGGACGCACGCTTCGCGCGTCTCCAAACCGTTCAAATGCGACCAGTGTAAGGGCGCGTTCATCCGCGAGTCCGACTACACCGCCCACATGAATTCCCACAAGAGCATCAGGCCGTACACGTGCAATTACTGCGGCGCGCAGTTCATACGCAAGTACAACTGTCAGCGACACGTCAAAGAACACGAGAACGTCAAAACGTTCAACTGTCAGGTTTGTGGTAAGTCCTTTCACAGATCGTACTACCTGAAAGATCACATGCGAGTCCATAGCGGGATCAGACCGTTCACGTGTCACGTCTGTGGTAAAACGTCAACGACGAAATCTAACCACAATAAGCACGTGCAAATACATCACGCTCGCGAGCCAGTCAGTACTGAGAATTAG
- Protein Sequence
- MEMNNVVCPVCTLYLRPGITLKSHLTSHPKHKVIEALVRLSSADIQNLEPVTEAPESNSNTNNNSVGNTQLNTSAVNQTWNQDNCAATTTTPTPGMQGNHVFIYQQSMSTSGPQPNVLNVNPMSQQYVIPTVLNPQMMPYVYQQQQVIMSSGSCIPQMRVLPFELANDTTDHSSNSGSESHPCIEEVEIEKTQSKLIEIAELEPSNSQKSFEDNLEDDKLDSSKPEKIEDKGYKVENEAVLNMGTRYEVNHETPSCSDWNTSSEQHDLNKACQTQNVVNVSPRSSEHEPEIIENLDKKYYYFNETENSSTYHSKEHMNNIVYDQPEPIYSTANILESNEHLDFVDMDGMHVIIGDFATNPIISQVENYEVNRADRSGILMNIGGMMDSQKETFNGHAEIEESMSRGSTMVNMRTDERMPPRGELSGQESIGDTSDMNWSRLHYNEGSSARESWEASDVSDVDEPPMDHQVQLAAEPDDNDVPSVVGYIAPPLNFKCSLCGEAFPCLQDRKEHDLEQHPDKLKSTLVGGKIAGQRKVKKLVVKLKSETENFDVVFTNKIKVETNNETKTTDDDQILATELKTDENITVDSRTVCSLCNCVMSDVKALREHKLEVHKISPDLRFKCSTCDESFPNEYKYTEHLKVHPLECRLCGKLFYRRQNMQLHMKRHLGIKPYKCEICEKAFLTKQKLEEHRNTHTGNSPIKCTLCDETFRRHSNLVQHRNRHHLKLKKKVKDYVCYCGEYFHSKKKLAWHKETHDPKPKACTKCSEKFIHLSSLTRHMRRAHNERFLPKEERSNENVECPICKGVYLRSSLDVHIRNHSGLRPFSCLICNKDFTTRWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDYTAHMNSHKSIRPYTCNYCGAQFIRKYNCQRHVKEHENVKTFNCQVCGKSFHRSYYLKDHMRVHSGIRPFTCHVCGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -