Basic Information

Insect: Endomychus coccineus
Gene Symbol: -
Assembly: GCA_958510875.1
Location: OY294067.1:69887539-69891547[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.14 33 6.9 1.8 2 23 155 177 154 177 0.91

2 9 0.0016 0.37 13.0 0.6 1 23 183 206 183 206 0.97

3 9 5.6e-08 1.3e-05 27.0 1.0 1 23 212 234 212 234 0.98

4 9 3.7e-07 8.7e-05 24.5 2.7 1 23 240 262 240 262 0.98

5 9 6.9e-05 0.017 17.3 4.5 1 23 290 312 290 312 0.98

6 9 1.4e-06 0.00034 22.6 2.1 1 23 421 443 421 443 0.97

7 9 4.9e-06 0.0012 20.9 1.4 1 23 449 471 449 471 0.98

8 9 4.5e-07 0.00011 24.2 2.4 1 23 477 499 477 499 0.99

9 9 4e-06 0.00094 21.2 1.2 1 23 505 527 505 527 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.14	33	6.9	1.8	2	23	155	177	154	177	0.91
2	9	0.0016	0.37	13.0	0.6	1	23	183	206	183	206	0.97
3	9	5.6e-08	1.3e-05	27.0	1.0	1	23	212	234	212	234	0.98
4	9	3.7e-07	8.7e-05	24.5	2.7	1	23	240	262	240	262	0.98
5	9	6.9e-05	0.017	17.3	4.5	1	23	290	312	290	312	0.98
6	9	1.4e-06	0.00034	22.6	2.1	1	23	421	443	421	443	0.97
7	9	4.9e-06	0.0012	20.9	1.4	1	23	449	471	449	471	0.98
8	9	4.5e-07	0.00011	24.2	2.4	1	23	477	499	477	499	0.99
9	9	4e-06	0.00094	21.2	1.2	1	23	505	527	505	527	0.98

Sequence Information

Coding Sequence: ATGGACATTCTTGGTTACACTAGTTATGCCACGATCTGCAGGCTTTGCTTACAGAAGGATGGATTCATGTTTGGAATTTTTAACCACAGTCACACAGATAAAagcatttataaaaaaatcatggaTTGTACCGCTCTTCAGATATCAGCTGGAGATGGCTTACCCAAAGTTATTTGCCACAGGTGCCTATACAAAATAGAATTTTGCCTAGAATTCCGTCAGTTATGTTTCGTCTCTGACGCAACACTTAGACAGTTTTTTAATGTGAATAACAAAGAAGGATCTGTAATTGAAAATTCTCAATTAGAACATACGTTGCAAAATGAATTGCAATATGATCATTCAGATGCAGTGATTGTGGTGGATCCCACTTCTCTTGATTATAATTCAGACTACGAATCAGAGCGCAGTGAAAATGACAATACTGAAATGAGTGAATCTGCTGTTGTTTCCAATATATCTATGTGTAAATATTGCGACCATGCATTCATGAATAAAGCAGATTGCGTTGCTCATGAAAGTACGGCACATGATTGCGAATCACCATATTCTTGTCTAGATTGCAATATGAAGTTTGAAGACCGCCTTCAGTATGCAACTCATCTAAAAAGTATTCATCAAAATGACAAACCATTCAAATGCCCACAATGTGATCGAACTTTTGCCCGAAGATCCGATTTACGCAAACATACCATTGTACATACTGGGATCAAACCATTCACGTgcaaaatttgtttcaaatcatTTTCTCGGAACACTAATCTTTCTAAGCATGCACGGATTCATACTTTACAAAAACTGAAAGGTCCTAAAAAGATAGGATTGGATCTAAAGAATCACAAGAGTTTATATGTGAAATCCAAAACATTTCATTGCAATTACTGTAAGGCAACGTTTGTACGTAAAGATAAATTATTGAAGCATGAAAAAACTCATACTCAAGAGGACATTGTAGAAGAAAAAGTGGACATTGTAGATGAATTCTTTTACGAACCAAATTTGAATGAGACTAATGATTTGGAAGCGAAAAAGAGTAGTACTTGGAACAATTCAGAGAATATGGTTATTAGTGTTGATCCCTTTAGTCATAATGGTTTCACAAATATTGAAAGTAATGGCACAAACGACTATTTCAACACACCAACGGACAGTATAAAAGTGGAAGCTGTCAATGTTGAAGCGGACAATAATTTGGAGCACGGCTTTGAACCTATTTTGGGTGATAAAGTTGATGTTATACCCAAAGAGGTTGAGCGACCTTTTTCGTGCGACACATGTAACAAACGATTTTCTACAAACGAAAATTTACGTTATCACCAGGCAAGTCATTCTGGAATTCGTCCATATAGTTGCAGTACTTGTAGTAAAACATTCGTTCGAAAAAGAGAGTTGGACCGGCATATCGTAACGCATACTGGTATGAAGCCTTTCAAATGTTCAAGGTGCAACAAAAGTTTCGGTCGTAAAGATAAACTTATTAGGCATCTCAGAATTCATGATGTGCTTAGACCTCATGTTTGCAATGAATGTGACGTATCATTTAGTAGAAGAGATGGACTTGCTCAACACAAGAAGACACATATTAAAAAAGAATGA
Protein Sequence: MDILGYTSYATICRLCLQKDGFMFGIFNHSHTDKSIYKKIMDCTALQISAGDGLPKVICHRCLYKIEFCLEFRQLCFVSDATLRQFFNVNNKEGSVIENSQLEHTLQNELQYDHSDAVIVVDPTSLDYNSDYESERSENDNTEMSESAVVSNISMCKYCDHAFMNKADCVAHESTAHDCESPYSCLDCNMKFEDRLQYATHLKSIHQNDKPFKCPQCDRTFARRSDLRKHTIVHTGIKPFTCKICFKSFSRNTNLSKHARIHTLQKLKGPKKIGLDLKNHKSLYVKSKTFHCNYCKATFVRKDKLLKHEKTHTQEDIVEEKVDIVDEFFYEPNLNETNDLEAKKSSTWNNSENMVISVDPFSHNGFTNIESNGTNDYFNTPTDSIKVEAVNVEADNNLEHGFEPILGDKVDVIPKEVERPFSCDTCNKRFSTNENLRYHQASHSGIRPYSCSTCSKTFVRKRELDRHIVTHTGMKPFKCSRCNKSFGRKDKLIRHLRIHDVLRPHVCNECDVSFSRRDGLAQHKKTHIKKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -