Basic Information

Insect: Endomychus coccineus
Gene Symbol: -
Assembly: GCA_958510875.1
Location: OY294067.1:240464873-240471581[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00033 0.079 15.1 0.1 1 23 21 43 21 43 0.96

2 14 0.00053 0.13 14.5 4.6 1 23 49 72 49 72 0.96

3 14 3.1e-06 0.00073 21.5 5.0 1 23 77 99 77 99 0.98

4 14 0.011 2.7 10.3 4.1 1 23 108 130 108 130 0.96

5 14 3.6e-05 0.0085 18.2 0.6 1 23 135 157 135 157 0.98

6 14 3.1e-05 0.0073 18.4 2.6 1 23 163 185 163 185 0.98

7 14 5e-05 0.012 17.7 2.3 3 21 193 211 191 211 0.97

8 14 0.046 11 8.4 0.2 1 20 226 245 226 247 0.93

9 14 0.00028 0.067 15.4 6.6 1 23 253 275 253 275 0.98

10 14 0.45 1.1e+02 5.3 1.0 1 21 427 447 427 448 0.94

11 14 0.0013 0.32 13.2 0.4 3 23 456 477 455 477 0.91

12 14 0.0057 1.4 11.3 1.5 3 23 483 503 482 503 0.97

13 14 0.0058 1.4 11.2 4.1 1 23 509 532 509 532 0.96

14 14 7.8e-07 0.00019 23.4 1.5 1 23 537 559 537 559 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00033	0.079	15.1	0.1	1	23	21	43	21	43	0.96
2	14	0.00053	0.13	14.5	4.6	1	23	49	72	49	72	0.96
3	14	3.1e-06	0.00073	21.5	5.0	1	23	77	99	77	99	0.98
4	14	0.011	2.7	10.3	4.1	1	23	108	130	108	130	0.96
5	14	3.6e-05	0.0085	18.2	0.6	1	23	135	157	135	157	0.98
6	14	3.1e-05	0.0073	18.4	2.6	1	23	163	185	163	185	0.98
7	14	5e-05	0.012	17.7	2.3	3	21	193	211	191	211	0.97
8	14	0.046	11	8.4	0.2	1	20	226	245	226	247	0.93
9	14	0.00028	0.067	15.4	6.6	1	23	253	275	253	275	0.98
10	14	0.45	1.1e+02	5.3	1.0	1	21	427	447	427	448	0.94
11	14	0.0013	0.32	13.2	0.4	3	23	456	477	455	477	0.91
12	14	0.0057	1.4	11.3	1.5	3	23	483	503	482	503	0.97
13	14	0.0058	1.4	11.2	4.1	1	23	509	532	509	532	0.96
14	14	7.8e-07	0.00019	23.4	1.5	1	23	537	559	537	559	0.98

Sequence Information

Coding Sequence: ATGCTCATTGAGAATAAATTAGGAATAGAAAATGTAGGTGACAGAGAAGCAGGAAAAACATTTGCTTGTAGCGTATGTCCAAAAGAATTTGTCAGCAAATGGAATTGGATGAGCCACGAAGCGAGACATGCTAAAAATTTCTCATTCAAATGTAAGGAGTGCAATAAAGGCTTTTATAGTAAATGCCAGTTCAATGATCACTATGCAGTTACGCATAAAGGGCATAGATTTGTCTGCCTTCATTGCAAAAAATCATTTACGGATAGGTCATATTACCGAAAACACATTAAAATACATAATCCTGCCTACATGAAATTGGATTATAAGTGTCTGCATTGTGATAAAACATATACATCCGAAGGTGGATACAATTTTCACAAAAGGTCACATCGAAATCCATCGTATGTGTGCGATGTTTGTGGAAAACTAGTATCATCATTGACCAGTCTAAAACATCACATGATGTTACATACAGGAGAAAAGCCATTTTCATGTAAATCTTGCGATAAACGATTCAATAAAAGAGAACTGTTGAAAACCCACGAACGCGTTCATACCAAAATGAAGCCGTTTGGATGCACCGAGTGCGGTAAACATTTTACTCAGAAGTGCACTCTAATTGTACATATGAGATGTGAAGTGTTCTTCGATGATACTGGAACTGAAGATGCAAACTATAAATGCGGGGTTTGCTCTCTAATATTTGAATCCAAAGAAGACTTTCTTGGACACCACATTAGCCAATTTGGTCAAATGTTCTCGTGTTGCAAGTGCGGCGAAAGTTTTAAAACATGTTCAGAATTGTATCAACATTACGACACCCATAAAATCGAAAATTTATCAGAATCTGAAGAAATAGAAGAAGTAGTTTTGGATTACGATGAAGAAGGAACGGAACAAATCGTCACTATCAATAGAGAGGATTCCAGTGAACTTCTGTATATTTTAGACGACTCTCAATGTGTTAATGAGGTAGTCATTGAAGGAGATGAAGCCGAGGCGTTAGAAAGGATCGACAAAACCGAAACAATTCGAATTGTCAATTTAGAACATGGCTATATGatacgaaatattgaagatgATAATAGAGATGGAGCTCAATGTATAATTTCCAGCAAACCTGTATTTTCCTCTAAAGCGAACCAGGCTTCCAATAAAAGATTGTATACAACTCCTAAATCGCGAACGCCCCAACCGAAACGAAGACATGAATTACCTGATTTTTCAACAACAGATTATACCTTCATAAGTCCCAATGACGAGATTGACATAGCCCATTACAAATGCCTCCGTTGTGAGCagttattcattaataaattcgTATTTTACAGACATATCGAGAAAGGTAAATGTTTCATCAACAACTGTGATGTGTGTACTAGGACCTTCtcgaaaaatagtgaattttatGAACATTATATTGCCGAACACACTGATCGGgctatttgtaatttttgttttagaACATTTATGTAcgaaaaaaatgttaaagaaCACATGCTTCGTCATTTAGATCAATTTAGGCATAGATGTGAAGAATGCAGTAAAGGATTTTATACTGTACGAGAATATAGAAATCATTACAAAAATAGACATATGGGCATACGGCACAAATGTGAGGTTTGCGGGAGAAGTTTTGCagatgaatattattttaagagACACATCGCTACCCACACTAAATCCAATAAACCTGTAACGTCAACAGTTACTTCTTAA
Protein Sequence: MLIENKLGIENVGDREAGKTFACSVCPKEFVSKWNWMSHEARHAKNFSFKCKECNKGFYSKCQFNDHYAVTHKGHRFVCLHCKKSFTDRSYYRKHIKIHNPAYMKLDYKCLHCDKTYTSEGGYNFHKRSHRNPSYVCDVCGKLVSSLTSLKHHMMLHTGEKPFSCKSCDKRFNKRELLKTHERVHTKMKPFGCTECGKHFTQKCTLIVHMRCEVFFDDTGTEDANYKCGVCSLIFESKEDFLGHHISQFGQMFSCCKCGESFKTCSELYQHYDTHKIENLSESEEIEEVVLDYDEEGTEQIVTINREDSSELLYILDDSQCVNEVVIEGDEAEALERIDKTETIRIVNLEHGYMIRNIEDDNRDGAQCIISSKPVFSSKANQASNKRLYTTPKSRTPQPKRRHELPDFSTTDYTFISPNDEIDIAHYKCLRCEQLFINKFVFYRHIEKGKCFINNCDVCTRTFSKNSEFYEHYIAEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEECSKGFYTVREYRNHYKNRHMGIRHKCEVCGRSFADEYYFKRHIATHTKSNKPVTSTVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -