Ecoc043248.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294069.1:158316245-158319081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.028 6.7 9.1 1.2 1 20 106 125 106 127 0.95 2 20 0.053 13 8.2 4.8 1 23 156 179 156 179 0.92 3 20 2.2 5.1e+02 3.1 0.2 6 19 190 203 188 206 0.92 4 20 0.088 21 7.5 0.2 1 23 212 235 212 235 0.92 5 20 7.6e-05 0.018 17.2 2.6 2 23 305 326 304 326 0.97 6 20 0.11 26 7.2 3.6 1 23 343 364 343 364 0.97 7 20 0.0005 0.12 14.6 0.9 2 23 368 389 367 389 0.96 8 20 0.12 29 7.1 0.0 2 19 418 435 417 437 0.93 9 20 0.076 18 7.7 0.2 1 23 459 482 459 482 0.90 10 20 0.00044 0.11 14.8 1.1 2 23 495 516 494 516 0.97 11 20 7.5e-06 0.0018 20.3 5.5 1 23 561 583 561 583 0.97 12 20 0.21 49 6.4 0.5 3 23 605 626 605 626 0.92 13 20 5.7e-05 0.014 17.6 1.8 1 23 646 668 646 668 0.98 14 20 0.0043 1 11.6 2.0 2 23 683 705 682 705 0.93 15 20 0.0025 0.59 12.4 0.7 1 23 719 741 719 741 0.94 16 20 0.14 32 6.9 0.1 1 23 772 795 772 795 0.95 17 20 0.029 7 9.0 0.6 2 23 805 826 805 826 0.94 18 20 3.5e-05 0.0083 18.2 0.8 1 23 839 862 839 862 0.96 19 20 3.4e-06 0.00082 21.4 1.6 1 23 870 892 870 892 0.99 20 20 0.0028 0.66 12.2 0.3 1 23 906 929 906 929 0.93
Sequence Information
- Coding Sequence
- ATGTTGCAAAAAATCGATGATGACGCTACACAGAACTCTTCAGTATCCCACGATAGTATCGAAGAAGCTCTACCGAAAGACCTACCGGAAGATCccaaaaaaatacaatttgcCGCTGGTTTGGAATTATTCACCCGCGATTCGACACCAATATCCATGGAAAGTCTGTCGAAAATCGAActgagttatattgaaaaatgtaaggCAATGGTCTCCATGTATCGATCTTTGAACTGCGCATGCCATAACGTCAAACATCCTAACCTCAAAGGACTACTTTCGCATCTTCGAGCTTTGAGAATATGGTTTCCAGTATTCACTTGTTATCATTGCATGATAACATTCACCGATAGATCGTCAAATATGAGGCACATCGTCAAGTGTCCCAAACTGCCTTTAGAAGCTATAATCAGACTGTCCAGCCTGCGAAAACGTAATTCAGTCAAAACGCGGTTATACCAAAATTATAAATGTGCAGAGtgtaaattcatgtttagtttTCACGAAGACTTTTGCAAGCACGTCGACGAGGACCACAGTGAAGGTGAACCCCCATTCGTGTGCTCCTGTAAAAAGGAGTTCAACACTTTAGAAGATTACCGAGAGCACGCTTACATGTCATGTCTGGTGTTATTTTATTGCGACATTTGTTTCATCACGACACCAACACTGGACGAATTCGTGAAACACGCGTCCCAACTGCACGATAATTCCGAAGGATTCATATTATTACAAGACGATAATTACAAGAAACGGACGTTCAGTAAGGTCGAAACCAGTCCAGGGGAAAATATTGTGGTCGGAAAACGTCGCAGTTCTATTTACAACAAAGCACCAATtttggaaccggaagttgaaaTCGATACGAAACCACGACTGTCAGTCATTCCATTGGGTGGTTCCAAAGCTACTACATGTTCGGAATGTGGCAAACTGTATTCGACTCACGCAAACATGTTGAGACATTACCGTACGCATGTCACGAACGCTCAACAGAATGGCAATTCGCCTAAAGATTCCGCATTGTATTGCTGTCCAGATTGCGGCACCATGTGCAATTTCCAAGAATGGGAAATCCACAAGAGGACGCATGACAAGAAGACATGTCTCGAATGCAATAAGATATTCCAGTTCCAGTCCGAACTGGAACAACATCGCAGCGTGCACTTGAATCTGAAGGTTTATCGCGATTCCAAAACGAAATCCTACAAGAGTACAATGCTCAGTCCGAATTCTGACAAAGCCAATCTGATTTGTAACATATGCGAAGCCGCCTTCGCAACTTTCGATGATTTCAACGAACACAAAGTGTGCCATGAAGAACTTCTACAAATACCAAAAATCGAACCACCGGATGAAGAAACTGAGAATAAATATGCTTGTCTTCCTTGTAACAAAGTCTATACAGGTAACAGTGGATTATGGGATCACAATAAAAGGAAACATCCGGATATGAAAACGCCGTCACAAATGTATCCCAAAGAATGCGAACAATGCAATAAAACTTTCTCCACCGGTGCAGCTTTCTTCAAACATAAACAAATACATTTGAAGGACACTCCAGAATTCGAGTCGATTTCTTCGGCGTCTCAATCGGACACCGAAACACAAGAAAAACCAAAAGCCATCTTAAAACCTAGGAAGTCGACGAGCGCGGCTAAAGATGAAGCAGAAGATTATCACACTTGCAAGAGATGCTTTAAAGTGTTCTCCACTAAGTATAACCTTCGAATCCATATGAAACTTCATGGAATCATTATGAATCCGGTTAGAGGAACAACCAAAATACTTAAAAGTCCGAAAAAAGTTTGGTGTGAATCATGCCATGTTGCGTTCGATAATACGGAAAAACTCCAAGCGCACAAAGAAGAAGAACATGATATGCCCGATTTAATAAACGTGATGGAAGAATTTAATAGTAAAGCTCCATTTATATTCACTTGTGATGTTTGCGTGAAAACGTTTTCGACGAAACTTGCGTTGAAGAAACATAAAGAGAAACATGCGTCCGAAGCTGCACTTAAATTGAATTCAGTTAAAACGTGTCATTGTAAATTGTGCAAGATAACATTTGAAACTACTGATTTATTAGCCGCGCATATGGTGAGCGAGCATGGAGAAGATCCAAAAGTTGACAAAACCAAACCCAAACAATTCGCTTGTACAATTTGCAAAAAGGTGTTCTTGACGTCGACGGCTTTATGTGCTCATCAAGGTTGGCACAAACGCGGTAAAGTGGAGAAATTTAGAACGCAAGAGAAAATATTTAGGAAAATGGTTAACAACATTCCGCAACCTTCGCCATCATCGGAATTTCAATGCTCGACTTGTCAACTCGAATTGCCGAACGATACGGCTTTACAAATACATATTTTGGAGAAACATAGGAATTTTAACGCTTTTATAATACCCCGTTGTAGTCCTTGCAATCAGGAATTCGAAACGCAGGAGGAATACGAAAATCATAAACGTCTTCACGAATTGGTGGAAAACCAGAAGAAGAATCAAAAGAACttttcttgtaaatattgtaCAGCAGCTTTCAGTCGTTCGGACACTTTGGCGACACATGTACGTCAGAATCATCGGGATTTCCTGCAAACGGAGTATCGTTGTAATCAGTGCGATCGTACTTTCGATAAACAAACGTCATTAACAATTCACTTGAAAGTTCACGAGAAACAAAAAGCTACTACTGGTGCAACTAAACCTTTATTCTTTTGTTCCATATGCAATATGGGATTCAATTTACCCAAAGACCTTAGAACACATACTATTAACGCTCATCCTTTCTGA
- Protein Sequence
- MLQKIDDDATQNSSVSHDSIEEALPKDLPEDPKKIQFAAGLELFTRDSTPISMESLSKIELSYIEKCKAMVSMYRSLNCACHNVKHPNLKGLLSHLRALRIWFPVFTCYHCMITFTDRSSNMRHIVKCPKLPLEAIIRLSSLRKRNSVKTRLYQNYKCAECKFMFSFHEDFCKHVDEDHSEGEPPFVCSCKKEFNTLEDYREHAYMSCLVLFYCDICFITTPTLDEFVKHASQLHDNSEGFILLQDDNYKKRTFSKVETSPGENIVVGKRRSSIYNKAPILEPEVEIDTKPRLSVIPLGGSKATTCSECGKLYSTHANMLRHYRTHVTNAQQNGNSPKDSALYCCPDCGTMCNFQEWEIHKRTHDKKTCLECNKIFQFQSELEQHRSVHLNLKVYRDSKTKSYKSTMLSPNSDKANLICNICEAAFATFDDFNEHKVCHEELLQIPKIEPPDEETENKYACLPCNKVYTGNSGLWDHNKRKHPDMKTPSQMYPKECEQCNKTFSTGAAFFKHKQIHLKDTPEFESISSASQSDTETQEKPKAILKPRKSTSAAKDEAEDYHTCKRCFKVFSTKYNLRIHMKLHGIIMNPVRGTTKILKSPKKVWCESCHVAFDNTEKLQAHKEEEHDMPDLINVMEEFNSKAPFIFTCDVCVKTFSTKLALKKHKEKHASEAALKLNSVKTCHCKLCKITFETTDLLAAHMVSEHGEDPKVDKTKPKQFACTICKKVFLTSTALCAHQGWHKRGKVEKFRTQEKIFRKMVNNIPQPSPSSEFQCSTCQLELPNDTALQIHILEKHRNFNAFIIPRCSPCNQEFETQEEYENHKRLHELVENQKKNQKNFSCKYCTAAFSRSDTLATHVRQNHRDFLQTEYRCNQCDRTFDKQTSLTIHLKVHEKQKATTGATKPLFFCSICNMGFNLPKDLRTHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -