Basic Information

Insect: Endomychus coccineus
Gene Symbol: -
Assembly: GCA_958510875.1
Location: OY294069.1:37207437-37209157[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0091 2.2 10.6 1.4 2 21 269 288 268 289 0.92

2 10 0.00029 0.07 15.3 0.9 2 23 297 318 296 318 0.96

3 10 4.4e-08 1e-05 27.4 0.5 1 23 324 346 324 346 0.98

4 10 3e-05 0.0072 18.4 0.1 1 23 352 374 352 374 0.98

5 10 4.5e-06 0.0011 21.0 0.6 1 23 380 402 380 402 0.94

6 10 1.4e-08 3.4e-06 28.9 2.9 1 23 408 431 408 431 0.97

7 10 6e-05 0.014 17.5 0.3 1 20 437 456 437 459 0.92

8 10 2.5e-06 0.00059 21.8 1.1 1 23 465 488 465 488 0.98

9 10 0.0015 0.35 13.1 5.5 1 23 497 519 497 519 0.98

10 10 0.00013 0.031 16.4 1.7 1 23 523 546 523 546 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0091	2.2	10.6	1.4	2	21	269	288	268	289	0.92
2	10	0.00029	0.07	15.3	0.9	2	23	297	318	296	318	0.96
3	10	4.4e-08	1e-05	27.4	0.5	1	23	324	346	324	346	0.98
4	10	3e-05	0.0072	18.4	0.1	1	23	352	374	352	374	0.98
5	10	4.5e-06	0.0011	21.0	0.6	1	23	380	402	380	402	0.94
6	10	1.4e-08	3.4e-06	28.9	2.9	1	23	408	431	408	431	0.97
7	10	6e-05	0.014	17.5	0.3	1	20	437	456	437	459	0.92
8	10	2.5e-06	0.00059	21.8	1.1	1	23	465	488	465	488	0.98
9	10	0.0015	0.35	13.1	5.5	1	23	497	519	497	519	0.98
10	10	0.00013	0.031	16.4	1.7	1	23	523	546	523	546	0.95

Sequence Information

Coding Sequence: ATGACGAGAccaaaattccatttgaaaaactttaATTTGGCAAAAATTTGCAGAGTCTGTTTGTCTGAACGTGGACGTTTGAGAGATATATTTACAACTAAAATACCCATGATGATAGAATCCTGTGCATCAATAAAGGTATCTGTAGAAGATGGACTTCCTACCCAAATTTGCATAACTTGCTTTCGCTTAATTGCAAAATGCTATACCTTCAAAAAGAAAATTGAGAGAAATgatagaatattgaaaaatcatgtTAAAATAAATAGGCAGAATGAGAGAATTGAGAAAGATATTTTGGATATAGCAATGAATGAAGCACAAATTCGAACAGAACAATCCAATAATGAATATACTAGAGATGATGGTGCCAATATAGTAAATAAGAATCATGTAGAAGGAAAAATATTCAAGGAACTAATAGAGCCAGAAGAAATGAAAATGCAAAGGAAGTCAATCCGTCTCACAAGAAAAAGTAAGGAAAAGGCAGCTAAAgtaattgatgaaattttacatgAAGAAACAAACTCAACGCAAGGAATGCTTCTAGCAGAAAGACATTTTGAAGATGATTTATTTACATTAGAGGAAACTATAGTTGTTGATGATAATTTAAGAGATTCTGTATTCAGTATTGGACCTCCACCTCTGGTACCTTTGAAACCAACAGAAATGgcaaataacaccgaaaaaagtTCTGTTCCTTCGATATCAGAGGAGCCTCCACCTTTGATACCCATTAAACCACTTGTCGATGATTCAGTATTAAGCAACATTATAGAAAGTACTCCTAACATAACACTCCAATGTAACACATGTGAAGAAAAGTTTTGTAGTCTAGTGACTCTCAAAgaacataaattaacaatttgtcagcaaaATTCACTACAGTGTAATATCTGTAAAAAGGAATTCAAAGAACGTAAAAAGTTGATAGGGCATCTAAAAGGTCACATGATTACTAAGGACTATGCTTGTAAAATTTGTGGCAAGCGGTATCCAAATCCAAGTACTTTCCGGATACATATGCGCACTCACACAGGTGAAAGGCCATTTAAATGTAATATATGCAATAAGGGCTTCACCAGATGGGCTGGAGTTGTGGGACATCTTACTACACATCAAGAACATAAACCCTATACATGTGATACTTGTGGAAAAGGCTTTAAGATATCTTCGAACTTGGAACGACACAAAGTTCTACATTCAGCAAATTTGCCATTTTGTTGCAATTATTGTGGCAAAACATTTAGTCAAGCTGATAACTTACAATTACATATTAGGACTTATCACACTTACGAAAGACCATATTTGTGTAGTGAATGTGGAAAAGGCTTTGTATCATCTACTAGATTGAACCGTCATATGTGGGTGCATTCAGGATTCAAGCCATATAAATGTAGCACTTGTCCTAAGGCTTATTCCAATTCAAATGATCTGAAAAATCATGAAAGAAGTAATCATGGTACTGGAACTAACCAGAAACCATATGCATGTAATATGTGTGATATGCGTTTTTATCACCCCTGTAGATTAAGTAAACATTTGAAAACACATGAACGTCCTTTCCAGTGCATGAATTGTCCTAAATCTTTCACTACTAATATATTCTTAGAAAAACATTTCATAAGTAAACATAGTATAGCATTTGAAGAAATAGTTGTCACTTCATGA
Protein Sequence: MTRPKFHLKNFNLAKICRVCLSERGRLRDIFTTKIPMMIESCASIKVSVEDGLPTQICITCFRLIAKCYTFKKKIERNDRILKNHVKINRQNERIEKDILDIAMNEAQIRTEQSNNEYTRDDGANIVNKNHVEGKIFKELIEPEEMKMQRKSIRLTRKSKEKAAKVIDEILHEETNSTQGMLLAERHFEDDLFTLEETIVVDDNLRDSVFSIGPPPLVPLKPTEMANNTEKSSVPSISEEPPPLIPIKPLVDDSVLSNIIESTPNITLQCNTCEEKFCSLVTLKEHKLTICQQNSLQCNICKKEFKERKKLIGHLKGHMITKDYACKICGKRYPNPSTFRIHMRTHTGERPFKCNICNKGFTRWAGVVGHLTTHQEHKPYTCDTCGKGFKISSNLERHKVLHSANLPFCCNYCGKTFSQADNLQLHIRTYHTYERPYLCSECGKGFVSSTRLNRHMWVHSGFKPYKCSTCPKAYSNSNDLKNHERSNHGTGTNQKPYACNMCDMRFYHPCRLSKHLKTHERPFQCMNCPKSFTTNIFLEKHFISKHSIAFEEIVVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -