Ecoc054719.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294070.1:130758232-130759323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0072 1.7 10.9 0.7 5 23 4 22 3 22 0.95 2 12 0.00011 0.027 16.6 0.3 2 23 29 50 28 50 0.96 3 12 0.00027 0.065 15.4 1.3 1 23 55 78 55 78 0.97 4 12 1.6e-05 0.0037 19.3 0.7 3 23 83 103 82 103 0.96 5 12 6.2e-05 0.015 17.4 0.6 2 23 110 132 109 132 0.96 6 12 4.1e-07 9.7e-05 24.3 0.4 2 23 140 161 139 161 0.98 7 12 5.7e-08 1.3e-05 27.0 0.5 2 23 166 187 165 187 0.96 8 12 7.5e-07 0.00018 23.5 1.0 1 23 193 215 193 215 0.97 9 12 0.00085 0.2 13.9 3.7 1 23 221 243 221 243 0.96 10 12 2.1e-05 0.0049 18.9 2.1 1 23 249 271 249 271 0.99 11 12 0.73 1.7e+02 4.6 2.8 1 20 277 296 277 298 0.94 12 12 0.0027 0.65 12.3 0.9 1 23 311 334 311 334 0.90
Sequence Information
- Coding Sequence
- ATGCTCCAGATTTGCGGCAAGTACTGTGGAAATCAAAAAGCTTTAAGAAAACATACGAACTTACACGAGAAAAACAAACAACTGGTGTGTCAATTGTGTGACAAGAGATTCATCGGAGAGAGGATGCTGCAAAGTCACCTGAAGGTACACACAGAACTGAAATATCCATGCGAATTTTGTCAGAGGATCTACATATCCCTTTATCGTCTGAAGAAACACATCAAACGATCCCACATTCCCAATATATGCTCGGAATGCGACAAAGTTTTCTACGATCGGGCCGAATTCACCAAACATAAGAAGGAACACAAAGTGGGCCTGCCAGTGACGTGTACATTTTGCAGCAAAGCCTTCGACAAAGCGAAAAACCTGAGCGAACACATCCGCCTTCAGCACAAAGAGGACGGCAAAACGAACAAATGTGACATTTGCGAGAAAGAATTCATCAACGCTTCGTTATTGAAGAACCACATTAAAACCCACGACAAAAACCTCAAATGCAGCCAGTGCGGCAAGGTGTTCAGCTCCAGATACAACCTGGAGACGCACATGGTTGTCCATACTGGCGCAAGAAACCATAAGTGTCCCATTTGTGGAAACTCTTTCACTTCGAAGACTAGTCTGAAAAACCATGTGGCCATTCACACTGATGCAAGACCTTTTACTTGCGATTTGTGTTCCAAAACGTTCAAAACCAATCGCAGGCTCTACGTCCATAAGTATTCACACGCAACtgaagaaaaatacgaatgcgaAATATGTCAAGCGAAATTCAAAGTGAAACAATACCTGAAGTATCACATGAAGAAACATTCCGATGATAAACCGTACGAGTGTAAACCTTGTAAGAAATGGTTCAAACACAAAAAGTCCTGGGAAAAACACGCCCTCCATGGACAATCTAAACGTATTTCAACGAAAAGCCTGGATTTTGAATGTACTTTGTGCGGCGAATGTTTTGAAGAAGAACATTACTTGGTGGAACATGCTACGTTGGCACATGACGGTAGAAATGGAGATTCTCTCGAATATGTTCCGATAAAATTGGAGATCAAAAGTGAACCTTGGGAAGCTTTTGAATCGGATAATTAG
- Protein Sequence
- MLQICGKYCGNQKALRKHTNLHEKNKQLVCQLCDKRFIGERMLQSHLKVHTELKYPCEFCQRIYISLYRLKKHIKRSHIPNICSECDKVFYDRAEFTKHKKEHKVGLPVTCTFCSKAFDKAKNLSEHIRLQHKEDGKTNKCDICEKEFINASLLKNHIKTHDKNLKCSQCGKVFSSRYNLETHMVVHTGARNHKCPICGNSFTSKTSLKNHVAIHTDARPFTCDLCSKTFKTNRRLYVHKYSHATEEKYECEICQAKFKVKQYLKYHMKKHSDDKPYECKPCKKWFKHKKSWEKHALHGQSKRISTKSLDFECTLCGECFEEEHYLVEHATLAHDGRNGDSLEYVPIKLEIKSEPWEAFESDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -