Basic Information

Insect: Endomychus coccineus
Gene Symbol: -
Assembly: GCA_958510875.1
Location: OY294069.1:169083315-169089503[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.022 5.2 9.4 1.5 1 17 166 182 166 190 0.85

2 14 0.00019 0.044 15.9 1.0 1 21 193 213 193 217 0.90

3 14 3.7e-06 0.00088 21.3 2.0 1 23 225 247 225 247 0.98

4 14 0.045 11 8.4 2.0 1 19 271 289 271 292 0.96

5 14 0.0045 1.1 11.6 5.4 1 23 301 323 301 323 0.97

6 14 2.7e-06 0.00065 21.7 3.1 1 23 329 351 329 351 0.98

7 14 1.8e-05 0.0044 19.1 1.4 1 23 357 379 357 379 0.96

8 14 1.7e-05 0.004 19.2 0.3 1 23 385 407 385 407 0.98

9 14 0.0024 0.56 12.5 0.4 2 23 427 448 426 448 0.96

10 14 7.1e-07 0.00017 23.6 0.4 1 23 455 477 455 477 0.96

11 14 2.5e-05 0.006 18.7 5.5 1 23 483 505 483 505 0.98

12 14 7.6e-06 0.0018 20.3 4.6 1 23 511 533 511 533 0.97

13 14 1.4e-07 3.4e-05 25.7 0.4 1 23 539 561 539 561 0.99

14 14 0.0014 0.33 13.2 3.4 1 23 567 590 567 590 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.022	5.2	9.4	1.5	1	17	166	182	166	190	0.85
2	14	0.00019	0.044	15.9	1.0	1	21	193	213	193	217	0.90
3	14	3.7e-06	0.00088	21.3	2.0	1	23	225	247	225	247	0.98
4	14	0.045	11	8.4	2.0	1	19	271	289	271	292	0.96
5	14	0.0045	1.1	11.6	5.4	1	23	301	323	301	323	0.97
6	14	2.7e-06	0.00065	21.7	3.1	1	23	329	351	329	351	0.98
7	14	1.8e-05	0.0044	19.1	1.4	1	23	357	379	357	379	0.96
8	14	1.7e-05	0.004	19.2	0.3	1	23	385	407	385	407	0.98
9	14	0.0024	0.56	12.5	0.4	2	23	427	448	426	448	0.96
10	14	7.1e-07	0.00017	23.6	0.4	1	23	455	477	455	477	0.96
11	14	2.5e-05	0.006	18.7	5.5	1	23	483	505	483	505	0.98
12	14	7.6e-06	0.0018	20.3	4.6	1	23	511	533	511	533	0.97
13	14	1.4e-07	3.4e-05	25.7	0.4	1	23	539	561	539	561	0.99
14	14	0.0014	0.33	13.2	3.4	1	23	567	590	567	590	0.95

Sequence Information

Coding Sequence: ATGGAATACTCCAATCTTTGTCGTTGTTGTATGGAAATTGgcgaaataaatattttagaaactgtATTCGAATCTTTACGCTTAGCTGAAGTCATAGAAAAGTGTACTTTCACAAAAattGAATTGGAAGACAACTTGCCTAAGAAAATATGCCAGTCGTGTTTTGATAAGTTAGCCACAGCTTATCTGTTCATAGTGAAATATGAAAgtgttcaaaaatctttgatagAATTGCAAACATCTCAGATAATCGTTGACAAAGGAAGTGTTACTGCTACAGAAGATCTCCAAGACCAATTTGATGAAGAAAATAACATCAGTAATGAttataattcagaatttgagataaaatatgaaaatgttgatGATGTCGATGAAGGCAGTAGTGATGATGAAAAACCATTAATCTACATTTttaaaaagttacaaaaaaatGGCATTGAGAGTGAAGAGTGTATTGGAGAGCAAAATGACAAGATTATCCatacaaaaattcataactgcAAAATTTGCACTGAATCATTTGTTACTCGATCAGCTTTATTATTCCATAATAAGAAGTCAAACCATTCAAAATATGTGTGTACAACTTGCAAAAAATCTTTCAAAGGTCCTAGGGAGTTGAAGGAACATTCACTGAAGGAAAACCATGAAAACCAGTTCAAACCAAAATATAAGTGCCAAGATTGCTCCAAACTATTTTCCAGCAATTCATTACTAGAAAAACACAAGAAGATTCATACTTTTTCAGATGATGAAAACACCATACACACAGAAAATGATAAGAAAGAAAGCCGATCAGATAGAATTCATTCTTGCACTGAATGTCCTGAGAAATTCATATATATGaagttattggaaaaacatTGCAAGGAAACAGGTCATCCTTGTCCAAGGAGATTCGATTGTGAAATTTGCAGCATGAAATTTCTAACTAAATCATGTCTTAGAGCTCATCATCGGACCCATACAAAGGAGCAACCTCACCAATGTGATATATGTGGCATGAAGTTCAGCCTGAGATCAAATCTAGAACGACACAAAAAAAGACACACAGGGGAAAAAGCTTTCTTCTGTGAAGCTTGTGGCAGAGgattcatccAAAAGCATACTCTCACCATTCACATGCGCTTACACAATGGCGAAACTCCTTTCGTCTGCGAATTATGCGGCAAAGGGTACAGAGCAAAACCCTTACTCAGGCAACATATGAACAAACATAACGGCATCAGCACGTACTATAAAGACCATTATCTAAAACATGGCAGTGTCAAAGTTGAGTgcgaaatatgtaaaaaaatgttgactAAAAGTGGACTATACACTCACATGAAAATCCAACATGGCGATGGACTGAAGAAATACTTATGTAACTTGTGCGGGAAAACGTATACTTCCAAAAAGGCTTTGGAGATACACATGAATGTGCATACGAAAAAAGTAACGTACGATTGCCATATTTGTCTGAAGTCGTTCAAtcatcaaaattatttaaaaacgcATTTGAGGATTCATTCGGGCGAAAGACCGCATTGTTGCGACGTTTGTGGTAAGACTTTCGTACAAAGGGCCCATCTAGATGGGCACATGCGAACTCATACGGGAGCCAAACCGTATACTTGTAATTACTGTGATAAATCGTTTGCGCTCAACGGTAATTTAAAGGTACACGTTAGGATACACACGGGGGAAACCCCGCATCATTGCACCGTTTGCGGAAAAGGATTCTTCGATTCGAGTAGCAGGAAAAAGCACGAAGCTACTGTACATCAAATGCATCAAAGGCAGTAA
Protein Sequence: MEYSNLCRCCMEIGEINILETVFESLRLAEVIEKCTFTKIELEDNLPKKICQSCFDKLATAYLFIVKYESVQKSLIELQTSQIIVDKGSVTATEDLQDQFDEENNISNDYNSEFEIKYENVDDVDEGSSDDEKPLIYIFKKLQKNGIESEECIGEQNDKIIHTKIHNCKICTESFVTRSALLFHNKKSNHSKYVCTTCKKSFKGPRELKEHSLKENHENQFKPKYKCQDCSKLFSSNSLLEKHKKIHTFSDDENTIHTENDKKESRSDRIHSCTECPEKFIYMKLLEKHCKETGHPCPRRFDCEICSMKFLTKSCLRAHHRTHTKEQPHQCDICGMKFSLRSNLERHKKRHTGEKAFFCEACGRGFIQKHTLTIHMRLHNGETPFVCELCGKGYRAKPLLRQHMNKHNGISTYYKDHYLKHGSVKVECEICKKMLTKSGLYTHMKIQHGDGLKKYLCNLCGKTYTSKKALEIHMNVHTKKVTYDCHICLKSFNHQNYLKTHLRIHSGERPHCCDVCGKTFVQRAHLDGHMRTHTGAKPYTCNYCDKSFALNGNLKVHVRIHTGETPHHCTVCGKGFFDSSSRKKHEATVHQMHQRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -