Basic Information

Insect: Endomychus coccineus
Gene Symbol: su(Hw)
Assembly: GCA_958510875.1
Location: OY294068.1:53280566-53302616[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.2e-05 0.0028 19.7 0.7 1 23 140 163 140 163 0.97

2 13 0.016 3.7 9.9 0.4 1 23 194 217 194 217 0.94

3 13 5.3e-05 0.013 17.7 0.0 1 23 223 245 223 245 0.99

4 13 6.7e-07 0.00016 23.6 1.3 2 21 251 270 251 271 0.95

5 13 3e-07 7.2e-05 24.7 0.5 2 23 283 304 282 304 0.97

6 13 0.00019 0.044 15.9 0.9 1 23 314 336 314 336 0.95

7 13 6e-06 0.0014 20.6 0.7 1 23 342 364 342 364 0.98

8 13 8.5e-06 0.002 20.2 1.6 1 23 370 392 370 392 0.99

9 13 1.4e-05 0.0033 19.5 2.7 1 23 398 420 398 420 0.96

10 13 7.6e-05 0.018 17.2 1.3 1 23 426 449 426 449 0.96

11 13 2.4e-06 0.00057 21.9 0.4 2 23 456 477 455 477 0.96

12 13 3.3e-07 7.8e-05 24.6 0.5 1 23 483 505 483 505 0.99

13 13 3.3e-06 0.00079 21.4 3.7 2 23 512 534 511 534 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.2e-05	0.0028	19.7	0.7	1	23	140	163	140	163	0.97
2	13	0.016	3.7	9.9	0.4	1	23	194	217	194	217	0.94
3	13	5.3e-05	0.013	17.7	0.0	1	23	223	245	223	245	0.99
4	13	6.7e-07	0.00016	23.6	1.3	2	21	251	270	251	271	0.95
5	13	3e-07	7.2e-05	24.7	0.5	2	23	283	304	282	304	0.97
6	13	0.00019	0.044	15.9	0.9	1	23	314	336	314	336	0.95
7	13	6e-06	0.0014	20.6	0.7	1	23	342	364	342	364	0.98
8	13	8.5e-06	0.002	20.2	1.6	1	23	370	392	370	392	0.99
9	13	1.4e-05	0.0033	19.5	2.7	1	23	398	420	398	420	0.96
10	13	7.6e-05	0.018	17.2	1.3	1	23	426	449	426	449	0.96
11	13	2.4e-06	0.00057	21.9	0.4	2	23	456	477	455	477	0.96
12	13	3.3e-07	7.8e-05	24.6	0.5	1	23	483	505	483	505	0.99
13	13	3.3e-06	0.00079	21.4	3.7	2	23	512	534	511	534	0.94

Sequence Information

Coding Sequence: atggaagaaTCTCGGGAGGAGAATATTAAAGTAGAAGATTCTGATGTGAAAACAGAAGTTCATACAGTTTTACTTCAAAACATACCTATGGGAAATGACCATAATATGCCTGTTGTGTTGAGTAGTTTCGTCCAGAGTAATTCAGATGGGAATTTACAAATCAACAGTGAAGATCATGTTGTTCATGCCTACATTTTGGACGATGGGGATGTGTCGTCTACTATATCAGAAGGAAGTATTCAAATTTCTGGTTATATTGAGCATTCTCGAAATTCTTCCACAGCAAATCTTGAAGTAGAAGATTACATGGAAGAAGTTATTGATGAAGATGATTTGACTAGTTTGAGTGATGATGCTGATGACCCTGATATGAAACCTTTAGAAATCGATGAAGCGAATGTTCCACCACAAGCTGAATTTGATTGTAATTTATGCAGTAAAATATTCAAGACTTCAATTggaTTGAAAAGGCATGTGAAAACAGCACACTCCACAGATGAAGTAGAAAGTGATCCTCTAACATTTCAATTGTGCCCTTGTTGTGGTGAACCTTCAGACTCGGCGCACACGCTTGGAGATTACGAATGTGCTATATGCACCAAACTGTTCCTGCAACAGAAAATGCTAGAACGGCATACAAGTTTAGAACATCCTAGTTGTGATATTTATAAATGTGTTGAATGTGTAGCAGAATTTCCCGAAAAAAGTGAGTTGATAGCTCATATGAGGAGTCATAATTTCAAAGTGGCTAAGTGCCCAGATTGTAAAAAGGAATTTACCAGGAAGTATCATTTGGAACGACATATACAATTAACGGATTGTTCAAGGGTTAAACGTGAAGAGCTTAAGTGTGAgGtatgtgataaaatattttatagaaaaGACAATTTGAAGGTACATCTCCGAGCTCACGCAggtgaaattagaaaaaagcATCTGTTTCTTTGCATGTATTGCAAGAAAGAATTCCCAGGACATGCCTTACTGAACATTCACATCAGAACTCATACAGGGGAAAAACCTTTTTCTTGTGATCTGTGTCCGAAGAAGTTTCCATCTAGTGGTGCTATGAAGAAACATAGACGAATGCATACCGGCGAAAAACCCTATCAGTGTGCACATTGTGATAACAGATTCGCAGCTAAAGAAACACTCAACAGACATATCAGGACTCATACTGGTGATAAGCCACATACATGTCAGTTTTGTGGGAAATCTTTCATACAGGCAGCTCAGTTACGTGCTCATATCTTCCATCATACTGGAGAAAATGCCTACATATGTCCATATTGTACAAGAGCTTTCAATAGGAAATTGAGGCTAACAACTCATATTAAATACATGCATGAAGGTGCTGCTCCATTGAAATGTCCTCAATGCGATAAGACGTTCTTCAGGAAGGAAGACTTGGCGAGGCACGCAATTTCACATACTGGAGAAAGGCCGTTCCAGTGCGATCAATGCGACAAGGCCTTCGCAGTTAAATCTTCCCTAAAAATTCATCAGTTGACTCATAGAAAAGAACCACCTTGTAGCTGCGAATATTGCGGCAGAGCTTTCATCAGGCAAGACTGTCTGATGCGTCATATGAGAGCCAGACATCGCGATATCTTAGAAGATATAATGATAAGCGCCGAAAAGAAACGTCTCCAACAGCAACTCTTAACCGCGGTCTCGGAAGCAGCAGAAAAAGGCCAAAATAGCATCGTGGACACGGTGATATGGAATGAACTAACCCTCACCGAATCGATTAAAGAACTATTGACGTTGTTGGTGGATGAAGAATGTCTGGTCGAATTGGGACATCCAGATGCTCCAATCGATAAAGTATTAGATGCTGTCATAAAACGATGTGGTCACACTCCTGCATCCGAAGAAGATTTCGACTACATCGGACGTATGCGAGAGAACGCGAAATTGTTGTTCACCGCTGTAATCGATGACGATGCGGTTAAATCGTTACTGAACAATCAAACTGTAGAGGAGGTTATAATGCATGTGTTGAGGCTGGCTAAGAATCCGTAA
Protein Sequence: MEESREENIKVEDSDVKTEVHTVLLQNIPMGNDHNMPVVLSSFVQSNSDGNLQINSEDHVVHAYILDDGDVSSTISEGSIQISGYIEHSRNSSTANLEVEDYMEEVIDEDDLTSLSDDADDPDMKPLEIDEANVPPQAEFDCNLCSKIFKTSIGLKRHVKTAHSTDEVESDPLTFQLCPCCGEPSDSAHTLGDYECAICTKLFLQQKMLERHTSLEHPSCDIYKCVECVAEFPEKSELIAHMRSHNFKVAKCPDCKKEFTRKYHLERHIQLTDCSRVKREELKCEVCDKIFYRKDNLKVHLRAHAGEIRKKHLFLCMYCKKEFPGHALLNIHIRTHTGEKPFSCDLCPKKFPSSGAMKKHRRMHTGEKPYQCAHCDNRFAAKETLNRHIRTHTGDKPHTCQFCGKSFIQAAQLRAHIFHHTGENAYICPYCTRAFNRKLRLTTHIKYMHEGAAPLKCPQCDKTFFRKEDLARHAISHTGERPFQCDQCDKAFAVKSSLKIHQLTHRKEPPCSCEYCGRAFIRQDCLMRHMRARHRDILEDIMISAEKKRLQQQLLTAVSEAAEKGQNSIVDTVIWNELTLTESIKELLTLLVDEECLVELGHPDAPIDKVLDAVIKRCGHTPASEEDFDYIGRMRENAKLLFTAVIDDDAVKSLLNNQTVEEVIMHVLRLAKNP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -