Ecoc041716.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294069.1:123599288-123600856[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-07 0.00018 22.9 0.0 2 38 19 55 18 60 0.87
Sequence Information
- Coding Sequence
- ATGCCTAGAGAATATAAACCCAAAGCAGGACGAAAACGTTACAAGAAACCTGATCCAAACATCATTGAAGAGGCTAAAAATGATGTTAATAACAACGGGTATAGTATTCGACAAGCCGCTATAGAACACAACATTGCTTACACCGTTCTGCAAAGACACCTCAAAAATGTGAATGTTAGAAGACAAGGAGGTCAAACAGTGTTAAGTGAAGCCGAAGAGAAATGTATTGCTGAAAAATTACTTACATGTAGTGAGTGGGGCTACCCCTTAGATACCTATGATTTAAGATTGGTTATCCAACAATATTTAAATAGAGCTGGTAGGGTGGTGCCCCGTTTTAAGGACAATCTTCCTGGTAAAGAGTTTGCATATAGCTTTTTGAAACGACATTCAGATATGCTGTCAGAGAGAATGTGCCAAAATATAAAACGAGCCCAGGCTGTTGTTACAAGGGTAACAATTACAGAGTATTTCGAACACCTTTCTAAAGAACTAGAAGGTACTCCAGCCAGCAACATCATAAACTACGATGAGACCAACCTTTGCGATGACTCAGGacgaaaaaaaataatggcAAAGAGGGGATGCAAATATCCGGAGCGAATTATGAACCACAGTAAGTCGTCAACTTCAATCATGTTCGCTGCTTCTGGTAGTGGAGATTTACTTCCATGCTATGTCGTCTACAAAGCCTTGAACATGTATGACTCTTGGACTAGTGGAGGGCCACCCCGTACTAGATATAATCGTAGTAAATCGGGATGGTTCGACAGCTATTGTTTCGAGGATTGGGTACATTCAATCGCCATACCATACTTGAAGAAGTTACCTGGCAAAAAGATATTAATTGGTGACAATTTATCGTCGCACCTATCAGTACAATCGATAAAAGAGTGCTCAGTGAACaatattagttttatatttttacccAGCAACTCCACCCACTTGACGCAACCCTTAGACGTTGCCTTTTTCAAGCCATTGAAGGTTGCATGGAGAAAGATAattgaattctataaaaaagGACCTGGAAGAAAGGAATCTGGTATTCCTAAAAACGTCTTTCCAGGTTTATTGAGGAAGCTATTAGAATCGATTGAAGACAAcagatctaaaaatataatggCCGGATTCGATAAATGCGGCATTATACCTTTGAATGCTGATAGGGTATTGGACATGCTGCCTGTGGAGAATCCAACGAATGATAGGGAAGATGACATCAACACttcattttttcacattttgaagTCGATGCGGTATGATGAAAATCAACCTAAACAACGAAAGAGAAAACTCCATGTACCTGCTGGAAAAAGCGTAGCAGTTGATGATTTTGAGTCTTCTGACGAAAGTAGCCAACATTTTAGCACTCACGATTCAAATTCAGATATGGATCCCATGTCTGACTTTGAAGAGGAAATTGATGGAAATtctgatggtgctgaaaaaGAAGACATTTTTCTGCCATCTGCTGACCCTCGCATCTCGAATAATTCACCCCATCCAGCAATCTCAGATGGTCTCTTGCACGTCACCAAGGATGACATTGATATTGGTGACTGGTGA
- Protein Sequence
- MPREYKPKAGRKRYKKPDPNIIEEAKNDVNNNGYSIRQAAIEHNIAYTVLQRHLKNVNVRRQGGQTVLSEAEEKCIAEKLLTCSEWGYPLDTYDLRLVIQQYLNRAGRVVPRFKDNLPGKEFAYSFLKRHSDMLSERMCQNIKRAQAVVTRVTITEYFEHLSKELEGTPASNIINYDETNLCDDSGRKKIMAKRGCKYPERIMNHSKSSTSIMFAASGSGDLLPCYVVYKALNMYDSWTSGGPPRTRYNRSKSGWFDSYCFEDWVHSIAIPYLKKLPGKKILIGDNLSSHLSVQSIKECSVNNISFIFLPSNSTHLTQPLDVAFFKPLKVAWRKIIEFYKKGPGRKESGIPKNVFPGLLRKLLESIEDNRSKNIMAGFDKCGIIPLNADRVLDMLPVENPTNDREDDINTSFFHILKSMRYDENQPKQRKRKLHVPAGKSVAVDDFESSDESSQHFSTHDSNSDMDPMSDFEEEIDGNSDGAEKEDIFLPSADPRISNNSPHPAISDGLLHVTKDDIDIGDW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00646915; iTF_00646916; iTF_00646905; iTF_00646910; iTF_00646911;
- 90% Identity
- iTF_00646905;
- 80% Identity
- -