Ecoc048576.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294070.1:54243560-54244988[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-07 7.9e-05 24.0 0.0 7 39 24 56 18 61 0.82
Sequence Information
- Coding Sequence
- ATGCCTAGAGAATATAAACCCAAAGCAGGACGAAAACGTTACAAGAAACCTGATCCAAACATCATTGGAGAGGctaataatgatgttaataaCAACGGGTATAGTATTCGACAAGCCGCTATAAAACACAACATAGCTTACACCGTTCTGCAAAGACACCTCAAAAATGTGAATGTTAAAAGACAAGGAGGTCAAACAGTGTTAAGTGAAGCCGAAGAGAAATGTATTGCGGAAAAATTACTTACATGCAGTGAGTGGGGCTACCCCTTAGATACCTATGATTTAAGATTGGTTATCCAACAATATTTAAATAGAGCTGGTAGGGTGGTGCCCCGTTTTAAGGACAATCTTCCTGGTAAAGAGTTCGCATATAGCTTTTTGAAACGACATTCGGATATGCTGTCGGAGAGAGTGTGCCAAAATCTAAAACGAGCCCGGACTGGTGTTACGAGGGTAACAATTACAGAGTATTTCGAACACCTTTCTGAAGAACTAGAAGGTACTCCAGCCAGCAACATCATAAACTACGATGAGACCAACCTTTGCGATGACCCAGcacgaaaaaaaataattgcaaAGAGGGGATGCAAATATCCGGAGCGAATTATGAACCACAAAAAAACTCCATGTACCTGCTGGAAAAAGCGTAGCAGTTGA
- Protein Sequence
- MPREYKPKAGRKRYKKPDPNIIGEANNDVNNNGYSIRQAAIKHNIAYTVLQRHLKNVNVKRQGGQTVLSEAEEKCIAEKLLTCSEWGYPLDTYDLRLVIQQYLNRAGRVVPRFKDNLPGKEFAYSFLKRHSDMLSERVCQNLKRARTGVTRVTITEYFEHLSEELEGTPASNIINYDETNLCDDPARKKIIAKRGCKYPERIMNHKKTPCTCWKKRSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00646879;
- 90% Identity
- iTF_00646879;
- 80% Identity
- -