Ecoc056097.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294071.1:14475581-14477305[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-08 2.8e-06 28.6 0.0 1 35 18 51 18 58 0.91
Sequence Information
- Coding Sequence
- ATGGTGAGAAACTACCAGAGAACACCCGGGGCAAAGTCCTACCAAGACTACTCAGAAGAGAACATGCAAAAAGCCGTACAAGCTGTTAAGGAGGGGATGTCGAAAAAATTAGCTGCGCAAACGTATCAGGTACCTCGGACAACTTTGGGTCGTAAGATTCTTGGCAAAAATTCTGGAGCAGTGGGCCGCCCAAGAGTCCTGTCATCCGAGGAAGAACGCAGTATATCTGAGACCCTCGGAGTTGTGGCTGATTGGGGTTTCCCGTTAACCAGGCTGGATGTGAGGACGGTCATCGCAAAATACCTAGACAAACAAGGGAAAACAGTCACGATCTTCAAAAACAACACTCCAGGAGAAGATTTTCTTGATGCATTCATCCAGAGAAACAGGTTGTCCATTCGCCTAGCCTCGAACATAAAAAGGTCCAGATCATCCGTCGACCGTgaagacattttaaattttttcaccaATATCAATGAAGCCCTGAACGATGCAGATGATTTCAATATCTTCAATTATGACGAGACAAATGTCACAGATGATCCTGGAGCAAAAAAAGTGGTGGTCCCCAGAAACACAAAAAGGGTTGAAAGGGTACAGAACCACTCTCGCACCTCTATTAGCATTATGGTGTGCGGAAATGCAAAGGGGGATCTACTGCCTCCCATGATCGTTTATAAATCTGGAAATTTATATGAAAACTGGACAGAAGGCGGCCCTCCTGGAACGAAATATGCCAGTAGCCCCTCCGGTTGGTTTGATATGAACCTGTTCGAGACATggtttttcaaaatcctcctCCCGCACATAACGGAAACACGAAAACCTGGTGCTACAACTATTGTTGTAGGTGATAATCTCGCCAGCCACTTTTCACCTGCAGTTATTCAGTCCTGTAAGGAGCATGGTATTTATATAACTCCATTTCCTGCAAATGCCACCCATCTACAGCCACTTGATGTAGCTGTATTTGGACCCATGAAAAAGTGCTGGAGAAGGATTTTAGACAACTGGAGAAAGGAAAGCCGATATCCAGGAAATCTTCCCAAAGAGCAGTTTCCCAATTTGCTTTCTAGGTTATGGAAAGCCATATCTGAGAGTGTCAGCCAAAATTTGATATCTGGATTTCGAGCCACTGGGCTTTATCCACCTAATGCAAACGAGGTTCTGAAAAGAATTCCAGATGGATTAACACCAGACGATCGAGACACCATTGGAAGATCTCTTGATGCATCATTGATTGATCTTCTGAAAGAACACAGAGGAATTAGCAGTGAAGCAAATCCGAAGAAAAAAAGGGGCAAGAAACTTCAGCCTGGTAAAAATTTGGCAACAGATGAAGATGATAACCTGGCTCCCACAGATGAACCAATTGTAACTGCATCGAAGCCATTAGCTGGCCCAGGATCGTCTGGTATAGTCGGAAAGaacaaaaataagaagaaatctCGTCCAATTCAGCCTAGGCAAAAAAGTGAGAGACAAAAGAAAAGTGAAACAGATGCAAAGTGTGGCCTTTGTATTTGTAACTGGAGAGACTTTCTTGGCGGACAAGAATGGATCAAATGTATTCAGTGCCTTAAATGGATATGTGGCCTATGCAACAACGGAAGTAAAGATCCTTATTTCAAATGCGATTACTGTGACGATTCTGATGCAGAGCCGTTGGAATATCAAGACGATTCTGACGCCGACAAAGATTTTACACCCCAGTCAATGAGCTAA
- Protein Sequence
- MVRNYQRTPGAKSYQDYSEENMQKAVQAVKEGMSKKLAAQTYQVPRTTLGRKILGKNSGAVGRPRVLSSEEERSISETLGVVADWGFPLTRLDVRTVIAKYLDKQGKTVTIFKNNTPGEDFLDAFIQRNRLSIRLASNIKRSRSSVDREDILNFFTNINEALNDADDFNIFNYDETNVTDDPGAKKVVVPRNTKRVERVQNHSRTSISIMVCGNAKGDLLPPMIVYKSGNLYENWTEGGPPGTKYASSPSGWFDMNLFETWFFKILLPHITETRKPGATTIVVGDNLASHFSPAVIQSCKEHGIYITPFPANATHLQPLDVAVFGPMKKCWRRILDNWRKESRYPGNLPKEQFPNLLSRLWKAISESVSQNLISGFRATGLYPPNANEVLKRIPDGLTPDDRDTIGRSLDASLIDLLKEHRGISSEANPKKKRGKKLQPGKNLATDEDDNLAPTDEPIVTASKPLAGPGSSGIVGKNKNKKKSRPIQPRQKSERQKKSETDAKCGLCICNWRDFLGGQEWIKCIQCLKWICGLCNNGSKDPYFKCDYCDDSDAEPLEYQDDSDADKDFTPQSMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00646822; iTF_00646824; iTF_00646825; iTF_00646826; iTF_00646827; iTF_00646828; iTF_00646850; iTF_00646823; iTF_00646829; iTF_00646830; iTF_00646831; iTF_00646832; iTF_00646833; iTF_00646834; iTF_00646835; iTF_00646836; iTF_00646837; iTF_00646870; iTF_00646839; iTF_00646841; iTF_00646843; iTF_00646844; iTF_00646847; iTF_00646898; iTF_00646840; iTF_00646815;
- 90% Identity
- iTF_00646828;
- 80% Identity
- -