Ecoc048232.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294070.1:47814164-47814685[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-11 1.2e-08 36.2 0.0 3 41 20 59 18 61 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGAAAGTACGTGAGAGTGTTGAGCGGGCGTAATTACCAGAATTATAACACCGAAAATCTACGTAAAGCGATCGATGACGTCAAAAATGGAGCAAGGTCTTTGAGAAAAGCGTCGGAGTTCTATGGTGTTCCAAAGTCTACCATAAGTGATGCTGTCAAAGAAAATCATACAAAACGTGCAGAAGGGCAGCCTATCTTCagcgaagaagaagaagatagccTGGTTGTTCTCATAACATGCGCCGCAGAGTGGGGATTTCCATTATCCGAATATGACATCCGTGTCATAGTGAAACAATATTTGACGAGGAAAGGAGtcaacataaaaaaattccATGACAACATGCCTGGAAGGGAATGGACTAGATCATTTCTATCTCGTCACAAAGAGCTGGCTGTACGTGTTAGCCAAAACATTAAACTTTTTCGCGCACAGGTCAGTGATGAAACGTTAACCgaatatttttctgaatttgaaaaaacattGGAGAATGTAGATGCGGGAGAATATCGTTAA
- Protein Sequence
- MPRKYVRVLSGRNYQNYNTENLRKAIDDVKNGARSLRKASEFYGVPKSTISDAVKENHTKRAEGQPIFSEEEEDSLVVLITCAAEWGFPLSEYDIRVIVKQYLTRKGVNIKKFHDNMPGREWTRSFLSRHKELAVRVSQNIKLFRAQVSDETLTEYFSEFEKTLENVDAGEYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00646875;
- 90% Identity
- -
- 80% Identity
- -